Jatropha Genome Database
- JcCA0317481.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0317481.20 - phase: 0
(100 letters)
Database: castor_wgs_0.1_aa
31,221 sequences; 10,419,776 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29801.m003069 brg-1 associated factor, putative 73 3e-14
30148.m001413 brg-1 associated factor, putative 59 3e-10
29780.m001322 brg-1 associated factor, putative 59 4e-10
29676.m001637 Upstream activation factor subunit UAF30, putative 50 2e-07
29724.m000827 brg-1 associated factor, putative 47 2e-06
28140.m000105 nuclear receptor binding set domain containing pro... 45 8e-06
>29801.m003069 brg-1 associated factor, putative
Length = 141
Score = 72.8 bits (177), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 43/66 (65%)
Query: 30 LREFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNIVNCDEKLKGILLGKPQVDLAELPA 89
+ E VG S+I R R+W++IK NNLQDP+NK I+ CDEKLK I G+ +V E+
Sbjct: 74 MAELVGASEIPRTQALKRIWAHIKENNLQDPENKKIIICDEKLKKIFGGRDRVGFLEVAG 133
Query: 90 LIKLHF 95
LI HF
Sbjct: 134 LISPHF 139
>30148.m001413 brg-1 associated factor, putative
Length = 134
Score = 59.3 bits (142), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 12 ENPKKLANLIDLVNLPSTLREFVGQS-QISRLGCFMRVWSYIKTNNLQDPKNKNIVNCDE 70
+ P + ++ + L EF+G + SR ++W +IK +NLQ+P NK + CDE
Sbjct: 46 DKPVRATGILKAAPVSPALSEFLGGVPEASRTDVVKKIWDHIKLHNLQNPTNKKEIFCDE 105
Query: 71 KLKGILLGKPQVDLAELPALIKLHFPK 97
KLK I GK +V E+ L+ HF K
Sbjct: 106 KLKTIFDGKEKVGFLEIGKLLSRHFVK 132
>29780.m001322 brg-1 associated factor, putative
Length = 614
Score = 59.3 bits (142), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 15 KKLANLIDLVNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNIVNCDEKLKG 74
K+ L +L L+EF+G+S+ +R ++W YI+ NNLQDPKN+ I+ CDE L+
Sbjct: 262 KRGGGFTKLCSLSPQLQEFIGESKSARTEVVKKLWVYIRENNLQDPKNRRIILCDESLRA 321
Query: 75 IL 76
+
Sbjct: 322 LF 323
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 23 LVNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNIVNCDEKLKGIL 76
L +L L +FVG S+++R ++W+YI+ N+LQDPKN+ I+ CDE L+ +
Sbjct: 122 LCSLSPQLHKFVGVSELARTEVVKKLWAYIRENDLQDPKNRRIIKCDEALRDLF 175
Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 15 KKLANLIDLVNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNIVNCDEKLKG 74
K+ L +L L+EF G+S+++R ++W YI+ NNLQDPKNK + CDE L+
Sbjct: 411 KRGGGFTKLCSLSPQLQEFTGESELARTEVVKKLWIYIRENNLQDPKNKRNILCDESLRT 470
Query: 75 IL 76
+
Sbjct: 471 LF 472
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 34 VGQSQISRLGCFMRVWSYIKTNNLQDPKNKNIVNCDEKLKGILLGKPQVDL---AELPAL 90
G++++SR R+W YIK N+LQDP +K + CD+KLK + +VD + L
Sbjct: 549 TGENELSRADVVKRIWGYIKQNDLQDPSDKRRILCDDKLKELF----EVDSFNGFSVSKL 604
Query: 91 IKLHFPK 97
+ HF K
Sbjct: 605 LTAHFIK 611
>29676.m001637 Upstream activation factor subunit UAF30, putative
Length = 322
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 34 VGQSQISRLGCFMRVWSYIKTNNLQDPKNKNIVNCDEKLKGIL 76
G++ +SR R+W YIK NNLQDP +K + CDEKLK +
Sbjct: 259 TGENALSRADVIKRMWEYIKQNNLQDPSDKRRIICDEKLKELF 301
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 12 ENPKKLANLIDLVNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNIVNCDEK 71
E K+ L +L L+E G Q++R ++WS+I+ LQDP N+ + CDE
Sbjct: 116 EGKKRGGGFSKLCSLSPQLQELTGVPQLARTEVVKQLWSHIREKKLQDPNNRRNIICDEP 175
Query: 72 LKGILLGKPQVDLAELPALIKLH 94
+ L G +D+ ++ ++ H
Sbjct: 176 FRA-LFGVDSIDMFQMNKVLSKH 197
>29724.m000827 brg-1 associated factor, putative
Length = 397
Score = 46.6 bits (109), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 8 KAITENPKKLANLIDLVNLPSTLREFVGQS--QISRLGCFMRVWSYIKTNNLQDPKNKNI 65
++ TEN + A++I + L +F+G ++++L RVW YIK N L+DP N +
Sbjct: 307 ESTTENAEPGASVI---VISEALAKFLGTGGREMTQLEASRRVWEYIKVNRLEDPLNSMV 363
Query: 66 VNCDEKLKGIL 76
+ CD KL+ +L
Sbjct: 364 ILCDAKLRELL 374
Score = 45.1 bits (105), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 30 LREFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNIVNCDEKLKGIL 76
L+ VG+ + R ++W+YI+ NNLQDP NK + CD+ L+ +
Sbjct: 223 LQAIVGEPALPRTEIVKQLWAYIRKNNLQDPSNKRKIICDDALRVVF 269
>28140.m000105 nuclear receptor binding set domain containing
protein 1, nsd, putative
Length = 1586
Score = 45.1 bits (105), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 30 LREFVGQ------SQISRLGCFMRVWSYIKTNNLQDPKNKNIVNCDEKLKGILLGKPQVD 83
L EFV S +S+ + YIK NNL+DP+ K+ + CD +LK L GKP+
Sbjct: 371 LLEFVSHMRNGDTSMLSQFDVQALLLDYIKRNNLRDPRQKSQIICDSRLKN-LFGKPRAG 429
Query: 84 LAELPALIKLHF 95
E+ L++ HF
Sbjct: 430 HFEMLKLLEYHF 441