Jatropha Genome Database

JcCA0317291.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317291.30 + phase: 0 /partial
         (379 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29739.m003741 Methylthioribose-1-phosphate isomerase, putative        571   e-163
29308.m000186 translation initiation factor eif-2b alpha subunit...    58   8e-09
29981.m000578 translation initiation factor eif-2b beta subunit,...    56   2e-08

>29739.m003741 Methylthioribose-1-phosphate isomerase, putative
          Length = 382

 Score =  571 bits (1472), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 279/356 (78%), Positives = 298/356 (83%)

Query: 1   MATNSNSSVGLEVSNTLQSICYKRGSLHLLDQRKLPLETEYLVIGDASDGWSAIREMVVR 60
           MA NSNS   LEV +TLQSICY RGSL LLDQRKLPLETE+L I ++SDGWSAIREMVVR
Sbjct: 1   MANNSNSGSELEVDDTLQSICYNRGSLKLLDQRKLPLETEFLDIRNSSDGWSAIREMVVR 60

Query: 61  GXXXXXXXXXXXXXVEVFNLQDFNGTSDDAGSFLFQKLDYLVSSRPTAVNLSDAATKLKE 120
           G             VEVFN  DF GTS+DA SFLF+KL+YLVSSRPTAVNLSDAA KLKE
Sbjct: 61  GAPAIAIAAALSLAVEVFNFDDFTGTSNDAASFLFKKLEYLVSSRPTAVNLSDAANKLKE 120

Query: 121 VIXXXXXXXXXXXXVFQAYIEAAEIMLEDDVASNKAIGSHGASFIKNQLKNIERLSVLTH 180
           VI            VFQAYIEAAEIML+DD+ASNKAIGSHGASFI+NQLKN +RLS+LTH
Sbjct: 121 VIYKAAATASDSNSVFQAYIEAAEIMLKDDIASNKAIGSHGASFIQNQLKNPQRLSILTH 180

Query: 181 CNTGSLATAGYGTALGVIRSLHTDGVLERAYCTETRPFNQGARLTAFELVHDKIPXXXXX 240
           CNTGSLATAGYGTALGVIR+LH  GVL RAYCTETRPFNQG+RLTAFELVH+KIP     
Sbjct: 181 CNTGSLATAGYGTALGVIRALHAAGVLRRAYCTETRPFNQGSRLTAFELVHEKIPATLVA 240

Query: 241 XXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAMHHNIPFYVAAPLTSIDL 300
                 LMKD +VSAVIVGADRVAANGDTANKIGTYSLALCAMHHNIPFYVAAPLTS+DL
Sbjct: 241 DSAAAALMKDDQVSAVIVGADRVAANGDTANKIGTYSLALCAMHHNIPFYVAAPLTSVDL 300

Query: 301 CLSSGNQIVIEERSPKELLNTRGGLGEQVAASGISIWNPAFDVTPANLISGIITEK 356
            LSSG  IVIEERSPKELLN+RGGLGEQVAASGIS+WNPAFDVTPANLISGIITEK
Sbjct: 301 SLSSGKHIVIEERSPKELLNSRGGLGEQVAASGISVWNPAFDVTPANLISGIITEK 356


>29308.m000186 translation initiation factor eif-2b alpha subunit,
           putative
          Length = 398

 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 49/99 (49%), Gaps = 3/99 (3%)

Query: 195 LGVIRSLHTDGVLERAYCTETRPFNQGARLTAFELVHDKIPXXXXXXXXXXXLMKDGRVS 254
           L V+++   +  L R +CTE RP   G RL+  EL    +P            M +  V 
Sbjct: 231 LEVLKTAAQNKKLFRVFCTEGRPDRTGLRLSN-ELAKLDVPVKLLIDSAVAYTMDE--VD 287

Query: 255 AVIVGADRVAANGDTANKIGTYSLALCAMHHNIPFYVAA 293
            VIVGAD V  +G   N +GTY +AL A   N P YVAA
Sbjct: 288 MVIVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 326


>29981.m000578 translation initiation factor eif-2b beta subunit,
           putative
          Length = 412

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 8/111 (7%)

Query: 252 RVSAVIVGADRVAANGDTANKIGTYSLALCAMHHNIPFYVAAPLTSIDLCLSSGNQIVIE 311
           RV+ VIVG   V ANG    ++G   +AL A  H +PF V A    +        ++++ 
Sbjct: 259 RVNMVIVGVHAVMANGGVLGQVGLNMVALAARKHAVPFVVVAGTHKLCPLYPQDPRVILN 318

Query: 312 E-RSPKELLNTRGGL------GEQVAASGISIWNPAFDVTPANLISGIITE 355
           E + P +LL+  GGL      G       I I NPAFD  P  L+S  IT+
Sbjct: 319 EMKCPSDLLDF-GGLSDCLDFGNGSGVPLIHIVNPAFDYVPPELVSLFITD 368