Jatropha Genome Database

JcCA0317221.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317221.30 + phase: 1 /TE/partial
         (745 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29853.m000370 conserved hypothetical protein                           80   4e-15

>29853.m000370 conserved hypothetical protein
          Length = 177

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 74/142 (52%), Gaps = 10/142 (7%)

Query: 75  CFKCLGKGHYASQCPN-KRVMIAKDDG--NISSESECSXXXXXXXXXXXXXXXXXXXXPE 131
           C+KC G+GH    CPN K+V+ ++  G  +   E +                      PE
Sbjct: 36  CYKCGGRGHIVRDCPNPKKVLFSQAMGYESFEDEEDNDEDPRNIYDDLADKEPYACGPPE 95

Query: 132 HGE----ALVARRALNMHVKEESL-EQRENIFHTRCLISGKVCTLIIDGGSCTNVASVNM 186
             E    +LVA RAL   VK+ S  +QREN+FHTRCL+     ++IID GSC N+ +  +
Sbjct: 96  LNEGTPLSLVAHRALT--VKDASAGDQRENLFHTRCLVGTSSLSVIIDSGSCCNILNEKV 153

Query: 187 VNKLNLTCLKHPKPYKLQWLND 208
           V  LNL    HP+ Y LQW+++
Sbjct: 154 VRVLNLPTSPHPQLYSLQWISE 175