Jatropha Genome Database

JcCA0317221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317221.20 - phase: 0 /partial
         (522 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29843.m000287 Arginine decarboxylase, putative                        826   0.0  

>29843.m000287 Arginine decarboxylase, putative
          Length = 542

 Score =  826 bits (2134), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/531 (76%), Positives = 450/531 (84%), Gaps = 9/531 (1%)

Query: 1   ERSILEPKKKQQRSCRISV----STDVSLISNSHISQPDTFPPLVXXXXXXXXXXXXXFH 56
           ERS LE  KKQQRS  +      + + S IS SH +Q D  PPLV             FH
Sbjct: 12  ERSTLETGKKQQRSSNLREAGLDTREESFISRSHATQLDKPPPLVSALKASAAQNAASFH 71

Query: 57  FPGHNRGRAAPVSLTQLIGLRPFIHDLPELPELDNLFSPEGPILKAQMLAAKLFGSLETW 116
           FPGHNRG AAP SLTQLIGL+PFIHDLPELPELDNLFSPEG IL+AQMLA+KLFGS ETW
Sbjct: 72  FPGHNRGYAAPTSLTQLIGLKPFIHDLPELPELDNLFSPEGSILEAQMLASKLFGSQETW 131

Query: 117 FLVGGTTCGIQASIMATCSPGEHIILPRNCHISAISAMVLSGAIPKYIIPEYDCRWDIAG 176
           FLVGGTTCGIQA+IM TCSPGEHIILPRN H+SAISA+VLSGAIPKYIIPEYD  WDIAG
Sbjct: 132 FLVGGTTCGIQAAIMTTCSPGEHIILPRNSHLSAISALVLSGAIPKYIIPEYDYNWDIAG 191

Query: 177 GMTPSQVEKAIKELEMEGHKPAAVFVTSPTYHGISSNLNEISELCHSREIPVIVDEAHGA 236
            +TPSQV KA+KELEMEG KPAAVFVTSPTYHGI SNL+EIS++CHSR +P+IVDEAHGA
Sbjct: 192 AVTPSQVNKAMKELEMEGQKPAAVFVTSPTYHGICSNLSEISQVCHSRGVPLIVDEAHGA 251

Query: 237 HLGFHPQMPLSALKQGADLVVQSTHKVLSSLTQSSMLHMSGNIVDKERICQCLQTLQSTS 296
           HLGFHPQMP SALKQ ADLVVQSTHKVL SLTQSSMLHMSG IV+++RIC+CLQTLQSTS
Sbjct: 252 HLGFHPQMPRSALKQEADLVVQSTHKVLCSLTQSSMLHMSGKIVNRDRICRCLQTLQSTS 311

Query: 297 PSYLLLASLDAARAQLSEKPETIFNGAMKLATEAKNLIKKIPGITLLEIPSFSKFPAMDP 356
           PSYLLLASLDAARAQ+ E PETIFN AM+LA EAK+LIK+IPGITLLE PS ++F A+DP
Sbjct: 312 PSYLLLASLDAARAQIDENPETIFNKAMELAIEAKDLIKRIPGITLLERPSLAEFSAIDP 371

Query: 357 LRLTIGFWQLGLSGYEADDILDRNHRVVSELVESQSITFAINLGTCEEHVQRLVSGLKEL 416
           LRLTIGFWQLGLSGYEADD L RNH+VV+ELV +QSITFA NLGTC+EHVQRLVSGLKEL
Sbjct: 372 LRLTIGFWQLGLSGYEADDYLYRNHQVVAELVGTQSITFAFNLGTCKEHVQRLVSGLKEL 431

Query: 417 SASSLKTGTIEEKVKNGQNVLFTDISMTLNPRDAFFAKKRRVSIRESLGKVCGELICPYP 476
           +A SL++GT EE++K G  + F D+SM LNPRDAFFA KRRV IRESLG+VCGELICPYP
Sbjct: 432 AACSLQSGTTEERLKEGGYLSFADVSMRLNPRDAFFANKRRVDIRESLGEVCGELICPYP 491

Query: 477 PGIPAMIPGEVITERVLDYLLDVRSKGVV-----INGASDPQLSSIVICNV 522
           PGIP MIPGE+ITE  LDYLLDV+ KG V     ++GASDP LSSIVIC++
Sbjct: 492 PGIPVMIPGEIITEGALDYLLDVKRKGAVVSGAXVSGASDPLLSSIVICDM 542