Jatropha Genome Database

JcCA0317221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317221.10 - phase: 0 /partial
         (505 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29843.m000287 Arginine decarboxylase, putative                        632   0.0  

>29843.m000287 Arginine decarboxylase, putative
          Length = 542

 Score =  632 bits (1631), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/468 (67%), Positives = 359/468 (76%), Gaps = 3/468 (0%)

Query: 40  ERSTSKPEKKQQRSSQGKSIS-SRKDDSLISNFHVSQPDTSPPLVTXXXXXXXXXXXTFH 98
           ERST +  KKQQRSS  +      +++S IS  H +Q D  PPLV+           +FH
Sbjct: 12  ERSTLETGKKQQRSSNLREAGLDTREESFISRSHATQLDKPPPLVSALKASAAQNAASFH 71

Query: 99  FPGHNRGQAAPVSLTQLIGLKPFIHDLTGLQVLDKLFSPEGPIVEAQKQAAKLFGSLETW 158
           FPGHNRG AAP SLTQLIGLKPFIHDL  L  LD LFSPEG I+EAQ  A+KLFGS ETW
Sbjct: 72  FPGHNRGYAAPTSLTQLIGLKPFIHDLPELPELDNLFSPEGSILEAQMLASKLFGSQETW 131

Query: 159 FLVGGTTSGIQAAIMATCSPGEHIILPRNCHVSAISAMVLSGAIPKYIIPEYDSEWDIAG 218
           FLVGGTT GIQAAIM TCSPGEHIILPRN H+SAISA+VLSGAIPKYIIPEYD  WDIAG
Sbjct: 132 FLVGGTTCGIQAAIMTTCSPGEHIILPRNSHLSAISALVLSGAIPKYIIPEYDYNWDIAG 191

Query: 219 GITPLQVEKAIKELEMEGHKPAAVFVTSPTYNGICSNLNEISQLCHCRKIPLIADEAHGA 278
            +TP QV KA+KELEMEG KPAAVFVTSPTY+GICSNL+EISQ+CH R +PLI DEAHGA
Sbjct: 192 AVTPSQVNKAMKELEMEGQKPAAVFVTSPTYHGICSNLSEISQVCHSRGVPLIVDEAHGA 251

Query: 279 HLGFHPQLPLSALKQNADLVVQSTHKVLSSLTQSSMLHMSGNIVDRERISRCXXXXXXXX 338
           HLGFHPQ+P SALKQ ADLVVQSTHKVL SLTQSSMLHMSG IV+R+RI RC        
Sbjct: 252 HLGFHPQMPRSALKQEADLVVQSTHKVLCSLTQSSMLHMSGKIVNRDRICRCLQTLQSTS 311

Query: 339 XXXXXXXXXXXXXXXXXENPETIFHETMKLAIESKELIKKIPGITWLELPPSFCKFPAKD 398
                            ENPETIF++ M+LAIE+K+LIK+IPGIT LE  PS  +F A D
Sbjct: 312 PSYLLLASLDAARAQIDENPETIFNKAMELAIEAKDLIKRIPGITLLE-RPSLAEFSAID 370

Query: 399 PLRLTVGFWQLGLSGCKAGDILYRNHGIVPELVESRSITLAINLGTCKEHVQRLVSGLEE 458
           PLRLT+GFWQLGLSG +A D LYRNH +V ELV ++SIT A NLGTCKEHVQRLVSGL+E
Sbjct: 371 PLRLTIGFWQLGLSGYEADDYLYRNHQVVAELVGTQSITFAFNLGTCKEHVQRLVSGLKE 430

Query: 459 LSASSLKTG-TEEKVKNGENIPFTDISMSLNPRDAFFAKKRRVSIGES 505
           L+A SL++G TEE++K G  + F D+SM LNPRDAFFA KRRV I ES
Sbjct: 431 LAACSLQSGTTEERLKEGGYLSFADVSMRLNPRDAFFANKRRVDIRES 478