Jatropha Genome Database

JcCA0317211.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317211.20 + phase: 0 /pseudo
         (243 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29736.m002086 conserved hypothetical protein                          231   3e-61

>29736.m002086 conserved hypothetical protein
          Length = 238

 Score =  231 bits (588), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 117/186 (62%), Positives = 129/186 (69%), Gaps = 7/186 (3%)

Query: 1   MEEWNAK-AFNQXXXXXXXXXXXXXXXINASDQTTNGGSGSRVLLVFKEKPEGSNLTFDC 59
           ME WN++   +                I ASDQ TNGG G RVLL FKEKP GSNLTFDC
Sbjct: 1   MESWNSQQVLDLLIIFVAMALLSASSSICASDQMTNGGVGRRVLLGFKEKPRGSNLTFDC 60

Query: 60  SPSGACVPCQYSEKTDEKYRCSETGYRIPLKCIETKDNIKNGNDKKSQKTRSVIEISNEN 119
           SPSGACVPC YSEK+DEKYRCSETGYRIPLKC+E KDN K+GN+KKS  +RS +EIS E 
Sbjct: 61  SPSGACVPCLYSEKSDEKYRCSETGYRIPLKCVEIKDNAKDGNEKKSHNSRSAVEISQEI 120

Query: 120 ANPHAMLHDAASNEQRSLLDDSSTLEDGSQAYITYRSCIPPVNEEKLSVLGFEAFCEIAV 179
           A P   LHD  SN+ RSLLD      DGSQAYITYRSCIPPV+EEK+SV GFE   E   
Sbjct: 121 AKPQVTLHDTVSNKDRSLLD------DGSQAYITYRSCIPPVSEEKVSVFGFEVLGEQDE 174

Query: 180 FKNCLT 185
           F   LT
Sbjct: 175 FLALLT 180