Jatropha Genome Database

JcCA0317171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317171.10 + phase: 0 /pseudo/partial
         (575 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30169.m006480 hypothetical protein                                    409   e-114
29991.m000631 DNA binding protein, putative                            62   6e-10

>30169.m006480 hypothetical protein
          Length = 1915

 Score =  409 bits (1051), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/415 (52%), Positives = 268/415 (64%), Gaps = 17/415 (4%)

Query: 165  GKHVKSDSKTGKSNAKRGKNIIRNAKVQHQKSKRTPSGCKSVLIKNNKKVXXXXXXXXXQ 224
            GK++K DSKTGK++ KRGKN  R+ K  +QKSK+T  G  SV  KN+KK          Q
Sbjct: 1504 GKYMKMDSKTGKNDEKRGKNKNRSTKTHNQKSKKTTVGSSSVHPKNSKKTLRSSRLLRSQ 1563

Query: 225  KNKKVTIVVPLRRSPRKAKYNSLQNXXXXXXXXXXXXXXXXXXXXXXXXXTSFRKKRTEN 284
            KNKK T+VVPLRRSPRKAK NSLQN                         TS+RKKRT+ 
Sbjct: 1564 KNKKATVVVPLRRSPRKAKLNSLQNKKSRGRKKGKQAKPKKTTGKKPTKVTSWRKKRTQA 1623

Query: 285  YHSYWLNGLFLSRKPGDERVMHFRSKKFLAPSESVSLDQHKCPLCHEAGYTSTLNYISCE 344
            YH++WLNGLFL+RKP DERVMHFR K+FLAPSES   DQ KC LC EAG TSTL+YISCE
Sbjct: 1624 YHNFWLNGLFLTRKPDDERVMHFRRKRFLAPSESAIHDQPKCHLCSEAGNTSTLSYISCE 1683

Query: 345  MCGEWFHGDAFGLNVEKSNRLIGFRCHVCRKSTPPVCPFL---RSHESETAQDQNDVGNE 401
            +CGEW+HG AFGL+ E SN+LIGFRCH+CR   PPVCPF+   R+HES+ A  +NDV NE
Sbjct: 1684 ICGEWYHGAAFGLDAENSNKLIGFRCHMCRNCKPPVCPFVAVTRNHESQMASAENDVENE 1743

Query: 402  FS-EQANNIPHLSGINLLEESLGKDEDQRDSFSVDESVHGKEQFGATLDSDKTFAPRSRL 460
             S E  N + H +  NL ++SL  +ED R S   D+ VH ++        D +F P+S+L
Sbjct: 1744 LSIEGTNLVEHPTETNLFQDSL-LNEDHRGSLPADDPVHRED--------DHSFVPKSKL 1794

Query: 461  EVGYQGGLGDMKVDIDAIQISNDNLNPESISCNENHMPKEKTIESRHDSIVTSHDQMQSP 520
            E+     L ++K   DA+QIS++ LNPE ISCNENH  KE  I S HD+IV SHDQMQ P
Sbjct: 1795 EIANGNVLNNLKESTDAVQISDEYLNPELISCNENHTSKESAINSGHDAIVRSHDQMQPP 1854

Query: 521  SCNVDVNVIETEQASSEHVNATDNLKTPILKSPIDGVFLESVELHPHSFMATTEL 575
            S +V V+ + T    S      D   T  LKSP+DG   E++ELHP SF A  EL
Sbjct: 1855 SFSVGVDAMGTSGCGS----VRDESTTAFLKSPLDGALYETIELHPQSFTAAAEL 1905


>29991.m000631 DNA binding protein, putative
          Length = 1723

 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 292  GLFLSRKPGDERVMHFRSKKFLAPSESVSLDQHKCPLCHEAGYTSTLNYISCEMCGEWFH 351
            G+   +K  ++    FR K  L P  SV L+   C LC +  Y   L YI CE C  WFH
Sbjct: 1247 GVIWKKKNTEDAGTDFRRKNILFPGSSVMLNL-VCNLCKKK-YDRDLMYIHCETCSGWFH 1304

Query: 352  GDAFGLNVEKSNRLIGFRCHVCRKSTPPVCPFLRSHESE 390
             +A  ++      ++GF+C  CR+   P CP+  + E E
Sbjct: 1305 AEAVEIDESNLPNVVGFKCCRCRRIRSPKCPYDDNPEGE 1343