Jatropha Genome Database

JcCA0317161.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317161.20 - phase: 0 
         (459 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30146.m003545 conserved hypothetical protein                          809   0.0  

>30146.m003545 conserved hypothetical protein
          Length = 463

 Score =  809 bits (2090), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/463 (85%), Positives = 413/463 (89%), Gaps = 4/463 (0%)

Query: 1   MHTL-KHPLSPKTPTSASS---KMLERVLSSRRASPHPDDAVSDNDTLPLSGDESKTKKQ 56
           MHTL KHPLSPKTPTS +    KML+R LSSRR SP+PDD VSD DT  +SGDESKTKKQ
Sbjct: 1   MHTLNKHPLSPKTPTSTTVSTTKMLDRALSSRRVSPYPDDTVSDADTSLISGDESKTKKQ 60

Query: 57  SLSLLAANYLSRLSHXXXXXXXXXXXXXXXXXXXXXXXXFHSRNFVCVSPFDPAIRVGFF 116
           SL+LLA NY SRLSH                        FHSRNFVCVSPFDPA RVGFF
Sbjct: 61  SLTLLATNYFSRLSHLCPCPTPCLILCLLVVLVSTGSLLFHSRNFVCVSPFDPATRVGFF 120

Query: 117 GLDGLESDFGVLGVPCCRSKHGKKVEWTAKDLLKGLEEFVPIYETRPIKNNMYGMGFDHS 176
           G DGLESDFG LGVP CRSKHGK VEWT+KDLLKGL EFVPIYETRPIKNNMYGMGFDHS
Sbjct: 121 GFDGLESDFGALGVPWCRSKHGKSVEWTSKDLLKGLGEFVPIYETRPIKNNMYGMGFDHS 180

Query: 177 FGLWFIARWLKPDLMIESGAFKGHSTWVLRQAMPDMPIISLSPRHPEKYLKKGPAYVDGN 236
           FGLWFIARWLKPDLMIESGAFKGHSTWVLRQAMPD PIISLSPRHPEKYLKKGPAYVDGN
Sbjct: 181 FGLWFIARWLKPDLMIESGAFKGHSTWVLRQAMPDTPIISLSPRHPEKYLKKGPAYVDGN 240

Query: 237 CTYFAGKDFVDFGSVEWKSVMKKHGITDLSRVLIFFDDHQNELKRVRQALSAGFRHLVFE 296
           CTYFAGKDFVDFGSVEWKSV+KKHGITDLSRVLIFFDDHQNELKRV+QA+ AGF+HLVFE
Sbjct: 241 CTYFAGKDFVDFGSVEWKSVLKKHGITDLSRVLIFFDDHQNELKRVKQAMDAGFQHLVFE 300

Query: 297 DNYDTGTGDHYSLRQICDQSYIRGGGHSCFRDSDESRIRSKRKKFWEKAVDVDELCGPNE 356
           DNYDTGTGDHYSLRQICDQSYIRGGGHSCFRDSDESR+RSKRKKFWEKAVD+DELCGPNE
Sbjct: 301 DNYDTGTGDHYSLRQICDQSYIRGGGHSCFRDSDESRLRSKRKKFWEKAVDIDELCGPNE 360

Query: 357 AWWGVRGWMRDNFNHSNKPISYLEHFQNSRFIESILDVYWELPPVAGPSLTHQTRYDPAR 416
           AWWGVRGWMRDNFNHSNKPISY EHFQNSRFIES+LDVYWELPPVAGPSLTHQTRYDPAR
Sbjct: 361 AWWGVRGWMRDNFNHSNKPISYEEHFQNSRFIESVLDVYWELPPVAGPSLTHQTRYDPAR 420

Query: 417 TTPPIVEDGRYGLFQRIGLGRLENSVFNGYTQMVYLQISEQES 459
           T+PPIVEDGRYGLFQR+GLGRLE SVFNGYTQMVYL+IS  ES
Sbjct: 421 TSPPIVEDGRYGLFQRLGLGRLETSVFNGYTQMVYLKISGLES 463