Jatropha Genome Database

JcCA0317001.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317001.30 + phase: 0 
         (236 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28962.m000433 conserved hypothetical protein                          382   e-107
30009.m000838 conserved hypothetical protein                           59   2e-09

>28962.m000433 conserved hypothetical protein
          Length = 238

 Score =  382 bits (982), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 184/233 (78%), Positives = 200/233 (85%)

Query: 1   MQGKDGDEEPSDRHMSTISRHAFGDDEEQPAFSISIIENMKEEYGLFVWPCSVILAEYVW 60
           M+GKD DEEPS R+MST+S H FGD  E+PAFS+S IENMKEEYGLFVWPCSVILAEY+W
Sbjct: 1   MKGKDDDEEPSHRNMSTVSHHVFGDGLEKPAFSVSTIENMKEEYGLFVWPCSVILAEYIW 60

Query: 61  QQRDRFSGARVVELGAGTSLPGLTAAKLGSDVTLTDDSNRLEVLDNIRKVCNLNKLKCNV 120
           QQR+RFSGA VVELGAGTSLPGL AAKLGS VTLTDDSN LEVLDNIRKVC LNKLKC V
Sbjct: 61  QQRERFSGADVVELGAGTSLPGLAAAKLGSHVTLTDDSNSLEVLDNIRKVCYLNKLKCKV 120

Query: 121 LGLTWGIWDEAIFSLKPTIILGADVLYEASXXXXXXXXXXXXXQNSPGSVLITTYHNRSG 180
           LGLTWGIW+ +IF LKP IILGADVLYE+S             Q SPGSV ITTYHNRSG
Sbjct: 121 LGLTWGIWNISIFDLKPNIILGADVLYESSAFDDLFATVTFLLQKSPGSVFITTYHNRSG 180

Query: 181 HHLIEFLMVKWGLKCVKLLDGFSFMPSYKASGLNGNIQLAEIVLNSKNTEETN 233
           HHLIEFLMVKWGLKCVKLLDGFSFMPS+KASGL+GNIQLAEI+LN++ T E+N
Sbjct: 181 HHLIEFLMVKWGLKCVKLLDGFSFMPSHKASGLSGNIQLAEIMLNNEQTNESN 233


>30009.m000838 conserved hypothetical protein
          Length = 234

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 58/114 (50%), Gaps = 14/114 (12%)

Query: 45  GLFVWPCSVILAEYVWQQRDR----FSGARVVELGAGTSLPGLTAAKLGSDVTLTDDSNR 100
           G  +W   VIL +++    D       G ++VELGAG  L G  AA LG+ VTLTD  +R
Sbjct: 50  GSVMWDSGVILGKFLEHAVDSKMLILQGKKIVELGAGCGLVGCIAAFLGAQVTLTDLPDR 109

Query: 101 LEVLDNIRKVCNLNKLKCNVLG------LTWGIWDEA-IFSLKPTIILGADVLY 147
           L +L   RK    N    NV G      L WG   E+ +  L P  ILG+D++Y
Sbjct: 110 LRLL---RKNIEANLTHGNVRGSAVVKELIWGDEPESDLIELLPDYILGSDIVY 160