Jatropha Genome Database

JcCA0317001.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317001.20 - phase: 0 
         (215 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28962.m000434 conserved hypothetical protein                          299   8e-82

>28962.m000434 conserved hypothetical protein
          Length = 212

 Score =  299 bits (765), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 150/215 (69%), Positives = 163/215 (75%), Gaps = 3/215 (1%)

Query: 1   MAFAQYLLAVPVETSTHPKITILNXXXXXXXXXXXXXXXXXXXXXXXXXKAQKLSFFPKL 60
           M F+ YLLAVP + + HPK T LN                           ++LSFFP +
Sbjct: 1   MGFSNYLLAVPTDAAIHPKTTFLNPSSSTTTTTITDSLSVSFSYSFT---PKRLSFFPSV 57

Query: 61  QRIGHKAKAMPQESEVSLAADAFTHFKHLLLPITDRNPYLSEGTRQXXXXXXXXXKKYGA 120
             IGHK KA  QESEV++AAD FTHFKHLLLPITDRNPYLSEGTRQ         KKYGA
Sbjct: 58  PAIGHKVKAKAQESEVNVAADTFTHFKHLLLPITDRNPYLSEGTRQAAATTAALAKKYGA 117

Query: 121 DITVVVIDEKERESLPEHETQMSSIRWHLSEGGFQEFKLLERLGEGNKPTAIIGDVADEL 180
           DITVVVID K++ESLPEHE QMSSIRWHLSEGGFQEFKLLERLGEGNKPTAIIG+VAD+L
Sbjct: 118 DITVVVIDAKQKESLPEHEAQMSSIRWHLSEGGFQEFKLLERLGEGNKPTAIIGEVADDL 177

Query: 181 NLDLVVISMEAIHSKHVDANLLAEFIPCPVLLLPL 215
           NLDLVV+SMEAIHSKHVDANLLAEFIPCPVLLLPL
Sbjct: 178 NLDLVVLSMEAIHSKHVDANLLAEFIPCPVLLLPL 212