Jatropha Genome Database

JcCA0316871.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316871.30 - phase: 0 
         (122 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29912.m005404 hydrogen-transporting ATP synthase, rotational mec...   237   1e-63
29794.m003340 hydrogen-transporting ATP synthase, rotational mec...   220   1e-58
27395.m000082 hydrogen-transporting ATP synthase, rotational mec...   161   5e-41

>29912.m005404 hydrogen-transporting ATP synthase, rotational
           mechanism, putative
          Length = 122

 Score =  237 bits (604), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 113/122 (92%), Positives = 118/122 (96%)

Query: 1   MASKLNQLQSKACQASKFVAKHGTAYYKQLLEQNKQYIQEPATVEKCNLLSKQLFYTRLA 60
           MASKL+QLQSKACQAS+FVAKHGTAYYKQLLEQNKQYIQ+PATVEKCN LSKQLFYTRLA
Sbjct: 1   MASKLHQLQSKACQASQFVAKHGTAYYKQLLEQNKQYIQQPATVEKCNELSKQLFYTRLA 60

Query: 61  SIPNRYESFWKELDYVKNLWKNRQELKVEDAGIAALFGLECFTWFCAGEIVGRGFTITGY 120
           SIP+R ESFWKELDYVKNLWKNRQELKVEDAGIAALFGLECF W+CAGEIVGRGFT TGY
Sbjct: 61  SIPHRNESFWKELDYVKNLWKNRQELKVEDAGIAALFGLECFAWYCAGEIVGRGFTFTGY 120

Query: 121 YP 122
           YP
Sbjct: 121 YP 122


>29794.m003340 hydrogen-transporting ATP synthase, rotational
           mechanism, putative
          Length = 122

 Score =  220 bits (560), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 104/121 (85%), Positives = 111/121 (91%)

Query: 1   MASKLNQLQSKACQASKFVAKHGTAYYKQLLEQNKQYIQEPATVEKCNLLSKQLFYTRLA 60
           MASKL QLQSKA QAS+FVAKHG AY+KQLLEQNKQYIQEP TVEKCNLLSKQLFYTRL 
Sbjct: 1   MASKLAQLQSKATQASQFVAKHGCAYFKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLE 60

Query: 61  SIPNRYESFWKELDYVKNLWKNRQELKVEDAGIAALFGLECFTWFCAGEIVGRGFTITGY 120
           SIP RYE+FWKELDYVK+LWKNR +LKVEDAGIA +FGLECF WFCAGEIVGRGFT TGY
Sbjct: 61  SIPGRYEAFWKELDYVKHLWKNRTDLKVEDAGIATMFGLECFAWFCAGEIVGRGFTFTGY 120

Query: 121 Y 121
           +
Sbjct: 121 H 121


>27395.m000082 hydrogen-transporting ATP synthase, rotational
           mechanism, putative
          Length = 118

 Score =  161 bits (408), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 78/121 (64%), Positives = 95/121 (78%), Gaps = 4/121 (3%)

Query: 1   MASKLNQLQSKACQASKFVAKHGTAYYKQLLEQNKQYIQEPATVEKCNLLSKQLFYTRLA 60
           MASKL QLQ KA      VAK+G A+YKQLLEQNK ++Q+P TV++C LLS QL YTRLA
Sbjct: 1   MASKLPQLQGKASS----VAKNGLAFYKQLLEQNKHFVQDPPTVKRCQLLSNQLLYTRLA 56

Query: 61  SIPNRYESFWKELDYVKNLWKNRQELKVEDAGIAALFGLECFTWFCAGEIVGRGFTITGY 120
           SIP+R E+FWKE+  +KNL K++QE   E+AG+ ALFGLECF WF  GEI+GRGFT TGY
Sbjct: 57  SIPSRCEAFWKEVGSLKNLMKDKQEFNKENAGLIALFGLECFAWFYGGEIIGRGFTHTGY 116

Query: 121 Y 121
           +
Sbjct: 117 H 117