Jatropha Genome Database

JcCA0316521.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316521.20 + phase: 0 
         (465 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27471.m000424 conserved hypothetical protein                          342   2e-94
30170.m014157 nucleic acid binding protein, putative                  223   2e-58
29647.m001998 Homeobox protein LUMINIDEPENDENS, putative               52   6e-07

>27471.m000424 conserved hypothetical protein
          Length = 497

 Score =  342 bits (878), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 233/508 (45%), Positives = 283/508 (55%), Gaps = 101/508 (19%)

Query: 48  VLHHSNADEFNDLPPGFEGCHTLKNPLKVESSLIPTIQWKSPPKLVLSYDWHVGAGEESL 107
           +LHH    E +DLPPGF   H   N LK +SS IP I WK PPK+VLS++WHV AGEES 
Sbjct: 1   MLHHLPGKEISDLPPGFGDSHL--NHLKEKSSNIPRIAWKCPPKVVLSHNWHVAAGEEST 58

Query: 108 EAKAQKLREMRVLEAVFPRPSAIPPGPSISLDIEEEYYDDRLT-XXXXXXXXXXXXXXXX 166
           EA+AQK+RE+RVLEAVFPR SAIPP PSISLD+EEE+Y+D  T                 
Sbjct: 59  EAEAQKVREIRVLEAVFPRQSAIPPSPSISLDVEEEFYNDNFTPRIPVTPIEEGVVVDLP 118

Query: 167 SDSSAPVNNLS--KSPAILPTRL---PNSAAHNIPELEPRTSKKRTHGVSPXXXXXXXXX 221
           SD SAP+N LS  + PA  P  L   PNSA  + P LEP  S+K   GV P         
Sbjct: 119 SDLSAPLNTLSNPQLPA-FPRDLVSVPNSAERDTPVLEPPASEKPKLGVLPDLGADVVTA 177

Query: 222 XXXXXXXXXKSMEDGSQIDTDLLIKILSDPKMIEKLINNKKPPLSPASSP---------- 271
                    KSME GS IDT LL+KIL+DP+MI+KLIN ++ PLS   +P          
Sbjct: 178 ASAAVTAIMKSMEKGSLIDTGLLVKILNDPEMIDKLINGREAPLSMTRTPMLVSKPVTKS 237

Query: 272 ---------------TDGNLHNIFAGLKPIPKPVARST----SLPTVLSSPIP--GSLQP 310
                          TDGN H +  G +P  KPVA S        T+LS P+P  GSLQP
Sbjct: 238 ILPSCPKPNVTFATSTDGNFHFLPIGSQPPSKPVATSVFPSCHKSTMLSVPMPANGSLQP 297

Query: 311 PSTLSEVQPTGTRMPSQPMTRPV-------------------------VANL------VQ 339
           P+   EVQPT TR+P QP T P+                         V+N+      VQ
Sbjct: 298 PT--GEVQPTVTRLPPQPDTNPIPGSKPTASISLARQQSVNISIPKPAVSNMYTKPDQVQ 355

Query: 340 SKANSFLAQPVMAPKPIPNVMPPPLGVM--------------PVKDVNYIKNLIREHGSE 385
           S  +S  AQ  +APK    + P P  +               PVKD+NYIK+LIREHGS+
Sbjct: 356 STVSSIPAQ--LAPKSFAELKPNPNPIYGGTLQANAVSTKTNPVKDINYIKDLIREHGSD 413

Query: 386 KKDQNY--------NKIQNLGFAQNLKLREEKPKFQKPCMYYNTPRGCRNGSNCLFRHDS 437
           K +++         N I    F QN  LR   PKFQKPCMYY +P+GCRNGSNC ++HD 
Sbjct: 414 KHNEHMSYNGPHATNHILIKEFGQN-NLR---PKFQKPCMYYRSPKGCRNGSNCPYQHDL 469

Query: 438 SFQFQTGGSIEAPGAKRIKLSGEITGRS 465
           SFQFQTGG++EAP AKR+KL GEITGR+
Sbjct: 470 SFQFQTGGNLEAPYAKRMKLDGEITGRT 497


>30170.m014157 nucleic acid binding protein, putative
          Length = 461

 Score =  223 bits (568), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 172/468 (36%), Positives = 238/468 (50%), Gaps = 58/468 (12%)

Query: 18  LCQVKLFLTEDSPSKVGTQAQDNLQKKPSWVLHHSNADEFNDLPPGFEGCHTLKNPLKVE 77
            C ++LFLTE+SPS+VG  AQD+LQ K SW+ H +     + LPPGFEG   + N   V+
Sbjct: 28  FC-MRLFLTEESPSQVGLGAQDHLQAKASWLSHPAGTVGDDILPPGFEGGAPV-NQSYVK 85

Query: 78  SSLIPTIQWKSPPKLVLSYDWHVGAGEESLEAKAQKLREMRVLEAVFPRPSAIPPGPSIS 137
            S IP I+W+ PP+ VL   W V AGEES + + Q  REMRVLEAV+PRPSAIPP P+  
Sbjct: 86  LSDIPVIKWRCPPRFVLDLTWQVVAGEESKDVEVQNQREMRVLEAVYPRPSAIPPNPAFP 145

Query: 138 LDIEE-EYYDDRLTXXXXXXXXXXXXXXXXSDSSA----PVNNLSKSPAILPTRLPNSAA 192
            ++E+    D ++                 SD       PV++ S   A LP R      
Sbjct: 146 AEVEDFRQGDHQVPQIPITPIEDEDATDATSDFRGPQIVPVSSQSHLLAPLPQR------ 199

Query: 193 HNIPELE-PRTSKKRTHGV--SPXXXXXXXXXXXXXXXXXXKSMEDGSQIDTDLLIKILS 249
            +IP +   R ++K   GV   P                  KS E GS ID DLLIKIL+
Sbjct: 200 -SIPSISNTRINEKPVAGVLPVPGVEPDVVAAASAAFAAVNKSNEQGSLIDHDLLIKILN 258

Query: 250 DPKMIEKLINNKKPPLSPASSPTDGNLHNIFAGLKPIPKPVARSTSLPTVLSSPIPGSLQ 309
           +PK+IEKL+ +                +   +  + +PKP   + S   +   P P    
Sbjct: 259 NPKLIEKLVQD----------------YGAASNGQNVPKP---APSFVPLSDPPPPPPPV 299

Query: 310 PPSTLSEVQPTGTRMPSQPMTRPVVANLVQSKANSFLAQPVMA-PKPIPNVMPPP----- 363
             S  S +    T M +        ++   + +  F AQP  A P  +PN   PP     
Sbjct: 300 SLSDPSYMHMNRTEMNT-------TSSFAATSSGPFYAQPNGAGPGYLPNAQVPPPAVPA 352

Query: 364 --LGVMPVKDVNYIKNLIREHGSEKKD---QNYNKIQNL-GFAQNL---KLREEKPKFQK 414
             +GV  VKD+NY KNLI++HG E+++   Q  N+   L G  Q L   K RE KPK  K
Sbjct: 353 SSVGVPQVKDMNYYKNLIQQHGGERQEAPHQYGNRYSQLAGTNQELVNPKSRELKPKIMK 412

Query: 415 PCMYYNTPRGCRNGSNCLFRHDSSFQFQTGGSIEAPGAKRIKLSGEIT 462
           PC+Y+N+ RGCR+G+NC ++HD SFQ ++    E   AKR+K+  EI+
Sbjct: 413 PCIYFNSSRGCRHGANCAYQHDPSFQQRSSAISEVQSAKRMKVDREIS 460


>29647.m001998 Homeobox protein LUMINIDEPENDENS, putative
          Length = 1021

 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 84  IQWKSPPKLVLSYDWHVGAGEESLEAKAQKLREMRVLEAVFPRPSAIPPGPSISLDIEEE 143
           I W++PP++ L+  W VG GE S E   QK R  R +E ++     IP  P    D+E +
Sbjct: 531 IPWQTPPEIKLNDLWRVGNGENSKEVDVQKNRNRREIEIIYRTVQDIPANPKAPWDVEMD 590

Query: 144 YYDDRLT 150
            YDD LT
Sbjct: 591 -YDDTLT 596