Jatropha Genome Database

JcCA0316521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316521.10 + phase: 0 /pseudo/partial
         (207 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30071.m000444 3-hydroxyisobutyrate dehydrogenase, putative             82   2e-16
29912.m005435 3-hydroxyisobutyrate dehydrogenase, putative             73   1e-13

>30071.m000444 3-hydroxyisobutyrate dehydrogenase, putative
          Length = 308

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 57/86 (66%)

Query: 122 TTFDPFLASEISDVAFAKNYHSIDAPVSRGDRGDKNKTHAIFAGGDKVVIDRLNPLFVLM 181
           T+  P LA EI   A  K   ++D+PVS GD G ++   AIF GGD++VI+ L P+F ++
Sbjct: 109 TSSHPALAREIFASAREKGCWAVDSPVSGGDIGARDGKLAIFGGGDEIVINWLLPIFEVL 168

Query: 182 GKVNYMGAPGKGQLAKLTNQIAISSH 207
           GKV YMG PG+GQ  K+ NQI + ++
Sbjct: 169 GKVTYMGPPGRGQSCKIANQIVVGAN 194


>29912.m005435 3-hydroxyisobutyrate dehydrogenase, putative
          Length = 290

 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 78/156 (50%), Gaps = 11/156 (7%)

Query: 24  EFVSLSNTRIGSIDIRVMGRSVYAHL--AGYTHRLHSDPLXRPTSRSHWG-----QPCSI 76
           E V  SNTR+G I   VMGRS+ +HL  AGYT  + +  L +       G      P S+
Sbjct: 40  ESVGPSNTRVGWIGTGVMGRSMCSHLIKAGYTLTIFNRTLSKAQPLVDMGANLADSPLSV 99

Query: 77  SYCRCLSIXCHFFHRRLSFPHPSSPTGFXXXXXXXXXXXXXXCCMTTFDPFLASEISDVA 136
           +    +      F   +      S TG                 MTT DP LA+EIS  A
Sbjct: 100 ASASDVVFSIVGFPSDVRHVLLDSTTG----ALQGLRPGGVLIDMTTSDPSLAAEISAAA 155

Query: 137 FAKNYHSIDAPVSRGDRGDKNKTHAIFAGGDKVVID 172
            AKN HSIDAPVS GDRG KN T AIFAGGDK VID
Sbjct: 156 SAKNCHSIDAPVSGGDRGAKNGTLAIFAGGDKAVID 191