Jatropha Genome Database

JcCA0316511.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316511.20 - phase: 2 /partial
         (66 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29825.m000324 pentatricopeptide repeat-containing protein, putative    67   2e-12

>29825.m000324 pentatricopeptide repeat-containing protein, putative
          Length = 567

 Score = 66.6 bits (161), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/42 (71%), Positives = 35/42 (83%), Gaps = 4/42 (9%)

Query: 24  MKLFKEMREIGIEMDGFTLSGVINGVITACCNDLNLIRQFHC 65
           + LF+EMRE GI+MDG+TLSGVI    TACCND+NLIRQ HC
Sbjct: 125 LYLFREMRETGIDMDGYTLSGVI----TACCNDVNLIRQLHC 162