Jatropha Genome Database

JcCA0316451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316451.10 - phase: 0 
         (461 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29851.m002455 4-hydroxy-3-methylbut-2-enyl diphosphate reductase...   852   0.0  

>29851.m002455 4-hydroxy-3-methylbut-2-enyl diphosphate reductase,
           putative
          Length = 466

 Score =  852 bits (2202), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/466 (87%), Positives = 444/466 (95%), Gaps = 5/466 (1%)

Query: 1   MAISLQLCRVSLRTDLLSREN-LTPLNRRKPFSVRCAAAAGDESSS----VAMESEFDTK 55
           MAISLQLCR+SLRTDL SR+N  +PL RRKPFS+RC+AAA  +  S    VAM+S+FD K
Sbjct: 1   MAISLQLCRLSLRTDLFSRDNNSSPLLRRKPFSIRCSAAAASDDESSSASVAMDSDFDAK 60

Query: 56  AFRHNLTRSKNYNRRGFGYKEETLELMSQEYTSDIIKTLKENGNQYTWGNITVKLAEAYG 115
            FRHNLTRSKNYNRRGFG+KEETL+LMSQEYTSDIIKTLKENGN+YTWGN+TVKLAEAYG
Sbjct: 61  VFRHNLTRSKNYNRRGFGHKEETLQLMSQEYTSDIIKTLKENGNEYTWGNVTVKLAEAYG 120

Query: 116 FCWGVERAVQIAYEARKQFPDENIWLTNEVIHNPTVNQRLEEMNVQIIPVEEGRKQFEVV 175
           FCWGVERAVQIAYEARKQFPDE IW+TNE+IHNPTVN+RLEEMNV+ IP+EEGRKQFEVV
Sbjct: 121 FCWGVERAVQIAYEARKQFPDEKIWITNEIIHNPTVNKRLEEMNVENIPLEEGRKQFEVV 180

Query: 176 DSGDVVILPAFGAAVEEMLTLSDKKVQIVDTTCPWVSKVWNTVEKHKKGDYTSIIHGKYS 235
           ++GDVVILPAFGAAV+EMLTLS+K VQIVDTTCPWVSKVWNTVEKHKKGDYTSIIHGKYS
Sbjct: 181 NNGDVVILPAFGAAVDEMLTLSNKNVQIVDTTCPWVSKVWNTVEKHKKGDYTSIIHGKYS 240

Query: 236 HEETVATASFAGKYIIVKNMKEAQYVCDYILGGQLDGSSSTREAFLEKFKNAVSEGFDPD 295
           HEET+ATASFAG YIIVKNMKEA YVCDYILGGQL+GSSST+E FL+KFKNAVS+GFDPD
Sbjct: 241 HEETIATASFAGTYIIVKNMKEAMYVCDYILGGQLNGSSSTKEEFLKKFKNAVSKGFDPD 300

Query: 296 VDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNDHFISFNTICDATQERQDAM 355
           VDLVKVGIANQTTMLKGETE+IGKLVEKTMM+++GVENVNDHFISFNTICDATQERQDAM
Sbjct: 301 VDLVKVGIANQTTMLKGETEDIGKLVEKTMMQRYGVENVNDHFISFNTICDATQERQDAM 360

Query: 356 FKLVEEKLDLILVVGGWNSSNTSHLQEIAELRGIPSYWIDSEQRIGPGNRIAYKLNHGEL 415
           F LVEEKLDLILV+GGWNSSNTSHLQEIAELRGIPSYWIDSEQRIGPGNRIAYKLNHGEL
Sbjct: 361 FNLVEEKLDLILVIGGWNSSNTSHLQEIAELRGIPSYWIDSEQRIGPGNRIAYKLNHGEL 420

Query: 416 VVKENFLPEGPITIGVTSGASTPDKVVEDALVKVFNIKREESLQVA 461
           V KENFLPEGPITIGVTSGASTPDKVVEDALVKVF+IKREE+LQ+A
Sbjct: 421 VEKENFLPEGPITIGVTSGASTPDKVVEDALVKVFDIKREEALQLA 466