Jatropha Genome Database

JcCA0316351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316351.10 + phase: 0 
         (306 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m007101 DNA replication licensing factor MCM4, putative         521   e-148
27967.m000046 minichromosome maintenance protein, putative            155   3e-38
30076.m004661 DNA replication licensing factor MCM7, putative         149   2e-36
29805.m001487 DNA replication licensing factor MCM8, putative         145   2e-35
29737.m001249 DNA replication licensing factor MCM5, putative         144   6e-35
29693.m002033 DNA replication licensing factor MCM3, putative         142   2e-34
30128.m008586 DNA replication licensing factor MCM2, putative         125   2e-29
29806.m000936 Minichromosome maintenance protein MCM, putative        103   7e-23

>30131.m007101 DNA replication licensing factor MCM4, putative
          Length = 867

 Score =  521 bits (1342), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 255/284 (89%), Positives = 267/284 (94%)

Query: 23  LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
           L +VMEQQT+SIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPP+LLSRFDL
Sbjct: 584 LHEVMEQQTISIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPSLLSRFDL 643

Query: 83  IYLILDKADEQTDRHLAKHIVALHFENPETAQQDVLDIATLTTYISYARKRIHPRLSDEA 142
           IYLILDKADEQTDRHLAKHIV+LHFENPE+AQ +VLDIATLT Y+SYARK IHP+LSDEA
Sbjct: 644 IYLILDKADEQTDRHLAKHIVSLHFENPESAQHNVLDIATLTAYLSYARKHIHPKLSDEA 703

Query: 143 SEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVIEAF 202
           +EELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIR SE VEKHDVIEAF
Sbjct: 704 AEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKHDVIEAF 763

Query: 203 RLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRENLVSATRNIIMEKLQLGGPSMRX 262
           RLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRENLVSATRNIIMEKLQLGGPSMR 
Sbjct: 764 RLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRENLVSATRNIIMEKLQLGGPSMRL 823

Query: 263 XXXXXXXKKQSSGNEVHLQDLRNAVATLSSEGFVVTHGDSVKRI 306
                  KKQ++ NEVHLQDLRNAVA L+SEGFVV HGDSVKRI
Sbjct: 824 LEIMEELKKQNTSNEVHLQDLRNAVANLASEGFVVVHGDSVKRI 867


>27967.m000046 minichromosome maintenance protein, putative
          Length = 713

 Score =  155 bits (392), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 87/187 (46%), Positives = 119/187 (63%), Gaps = 3/187 (1%)

Query: 23  LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
           + + MEQQT+SI KAGI A+LNARTS+LA ANP G RY+    +  N+ LPP +LSRFDL
Sbjct: 349 IHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDL 408

Query: 83  IYLILDKADEQTDRHLAKHIVALHFENPETAQQDVLDIATLTTYISYARKRIHPRLSDEA 142
           +Y+++D  D+Q D H+A HIV +H +  E A       A L  YI+YA K + P+L+ EA
Sbjct: 409 VYVMIDDPDDQVDYHIAHHIVRVH-QKREEALAPAFTTAQLKRYIAYA-KTLKPKLNSEA 466

Query: 143 SEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVIEAF 202
            + L   YV +R+    PG S+     T RQ+E+LIRLSEA+AR  L   V+   V  A 
Sbjct: 467 RKLLVDSYVALRKGDTTPG-SRVAYRMTVRQLEALIRLSEAIARSHLENQVQPRHVRLAV 525

Query: 203 RLLEVAM 209
           RLL+ ++
Sbjct: 526 RLLKTSI 532


>30076.m004661 DNA replication licensing factor MCM7, putative
          Length = 718

 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/191 (46%), Positives = 124/191 (64%), Gaps = 12/191 (6%)

Query: 23  LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
           + +VMEQQTVSIAKAGI  SLNART+VLA ANP   RY+ R +  +NI+LPP LLSRFDL
Sbjct: 453 IHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDL 512

Query: 83  IYLILDKADEQTDRHLAKHIVALHFENPETAQQDV--LDIATLTTYISYARKRIHPRLSD 140
           ++LILD+AD  +D  +A+H+V +H +N E+       L+ + L  YIS AR R+ P +  
Sbjct: 513 LWLILDRADMDSDLEMARHVVYVH-QNKESPALGFTPLEPSILRAYISAAR-RLSPYVPK 570

Query: 141 EASEELTRGYVEMRR---RGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHD 197
           E  E +   Y  +R+   + N P S   V     R + S++R+S ALAR+R SE V + D
Sbjct: 571 ELEEYIASAYSSIRQEEAKSNTPHSYTTV-----RTLLSILRISAALARLRFSETVAQSD 625

Query: 198 VIEAFRLLEVA 208
           V EA RL++++
Sbjct: 626 VDEALRLMQMS 636


>29805.m001487 DNA replication licensing factor MCM8, putative
          Length = 757

 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/216 (38%), Positives = 127/216 (58%), Gaps = 6/216 (2%)

Query: 23  LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
           L + MEQQ VS+AKAG++ASL+ARTSVLA ANP+G  YN   +V +N+ +   LLSRFDL
Sbjct: 477 LLEAMEQQCVSVAKAGLLASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDL 536

Query: 83  IYLILDKADEQTDRHLAKHIVALHFENPETAQQDVLDIATLTTYISYARKRIHPRLSDEA 142
           ++++LDK DE  D+ ++ HI++L  E         L    L  YI+YAR  + PR+S  A
Sbjct: 537 VFILLDKPDEVLDKQVSDHIMSLRLEPTRDVDFAPLPGPLLRKYIAYARTYVFPRMSRPA 596

Query: 143 SEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVIEAF 202
           +E L + Y+ +R       +S      T RQ+ESL+RL+EA AR+ L E +   D ++  
Sbjct: 597 AEILQKFYLRLRDH----NTSADGTPITARQLESLVRLAEARARLELREEITAQDAMDVV 652

Query: 203 RLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRR 238
            +++ ++     D   G +D    + G+S  +  +R
Sbjct: 653 EIMKESLYDKYVDEH-GFVDFGR-SGGMSQQKEAKR 686


>29737.m001249 DNA replication licensing factor MCM5, putative
          Length = 723

 Score =  144 bits (362), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 87/199 (43%), Positives = 122/199 (61%), Gaps = 11/199 (5%)

Query: 23  LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
           + + MEQQT+SIAKAGI   LN+RTSVLA ANP   RY+   +  +NI L  T+LSRFDL
Sbjct: 452 IHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQENIDLQTTILSRFDL 511

Query: 83  IYLILDKADEQTDRHLAKHIVALHFENPETAQQDVLDIAT----LTTYISYARKRIHPRL 138
           I+++ D+ D   D+ +A HI+ +H      A    + +A     L  YI Y R   HPRL
Sbjct: 512 IFIVKDRRDYIRDKIIASHIIKVHASA--DAASADIRVAKEENWLKRYIQYCRTECHPRL 569

Query: 139 SDEASEELTRGYV----EMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVE 194
           S+ AS  L   YV    +MR++ N  G +  V   T RQ+E++IRLSEALA+++LS +  
Sbjct: 570 SESASNRLQNEYVKFRQDMRKQANETGEATAV-PITVRQLEAIIRLSEALAKMKLSHVAT 628

Query: 195 KHDVIEAFRLLEVAMQQSA 213
           + DVIEA  L +V+  ++A
Sbjct: 629 EADVIEAVNLFKVSTIEAA 647


>29693.m002033 DNA replication licensing factor MCM3, putative
          Length = 769

 Score =  142 bits (358), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 124/228 (54%), Gaps = 42/228 (18%)

Query: 23  LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
           + +VMEQQTV+IAKAGI ASLNAR SV+A ANPI   Y+  L+   NI LP +LLSRFDL
Sbjct: 411 IHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDL 470

Query: 83  IYLILDKADEQTDRHLAKHIVALH------------------FENPETA----------- 113
           ++++LD+ D   DR +++H++ +H                  +   E A           
Sbjct: 471 LFIVLDQMDPDIDRQISEHVLRMHRYRSATDGGEGTLDGGARYGREEEADADSSVFVKYN 530

Query: 114 ------------QQDVLDIATLTTYISYARKRIHPRLSDEASEELTRGYVEMRRRGNFPG 161
                       ++D L I  L  YI YA+ RI P LSDEASE++   Y E+R   +   
Sbjct: 531 RMLHGKKTDRGRKRDTLTIKFLKKYIHYAKHRIQPDLSDEASEQIATAYAELRSSSS-TA 589

Query: 162 SSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVIEAFRLLEVAM 209
            +   +  T R +E++IRLS A A+++LS  V K DV  A ++L  A+
Sbjct: 590 KTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAI 637


>30128.m008586 DNA replication licensing factor MCM2, putative
          Length = 930

 Score =  125 bits (315), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/203 (37%), Positives = 114/203 (56%), Gaps = 24/203 (11%)

Query: 23  LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
           + + MEQQ++SI+KAGI+ SL AR SV+A ANP+G RY+   +   N+ L   ++SRFD+
Sbjct: 620 IHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSQNVELTDPIISRFDI 679

Query: 83  IYLILDKADEQTDRHLAKHIVALHF---------ENPETAQQDVLDIAT----------- 122
           + ++ D  D   D  LAK +V  HF         ++   +Q+D+L  A            
Sbjct: 680 LCVVKDVVDPVADEMLAKFVVDSHFRSQPKGGNTDDLSESQEDILASARPVDPEILPQDL 739

Query: 123 LTTYISYARKRIHPRLSDEASEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSE 182
           L  Y++YA+  + PRL D   E+LT+ Y E+RR      S  + +    R IES+IR+SE
Sbjct: 740 LKKYLTYAKLNVFPRLHDSDMEKLTQVYAELRRE----SSRGQGVPIAVRHIESMIRMSE 795

Query: 183 ALARIRLSELVEKHDVIEAFRLL 205
           A AR+ L + V + DV  A R+L
Sbjct: 796 AHARMHLRQHVTEEDVDMAIRVL 818


>29806.m000936 Minichromosome maintenance protein MCM, putative
          Length = 644

 Score =  103 bits (258), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 106/198 (53%), Gaps = 9/198 (4%)

Query: 25  QVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDLIY 84
           + MEQQT+S+AKAG++ +L+ RT V    NP G +Y+P  ++  N  L   LLSRFD++ 
Sbjct: 435 EAMEQQTISVAKAGLVTTLSTRTIVFGATNPKG-QYDPYQTLSVNTALSGPLLSRFDIVL 493

Query: 85  LILDKADEQTDRHLAKHIVALHFENPETAQQDVLDIATLTT---YISYARKRIHPRLSDE 141
           ++LD  + + D  ++ HI+A           D+ +I TL     YI + +    P L+ E
Sbjct: 494 VLLDTKNPEWDAVVSSHILAEKESGKGNENDDLANIWTLAMLRRYIHFVKGYFKPILTTE 553

Query: 142 ASEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVIEA 201
           A E++   Y +++RR     ++      T R +ESLIRL++A AR+     V   D I A
Sbjct: 554 A-EKIISSYYQLQRR----SATDNAARTTVRMLESLIRLAQAHARLMFRNEVTTLDAIMA 608

Query: 202 FRLLEVAMQQSATDHSTG 219
              +E +M  SA   S G
Sbjct: 609 ILCIESSMTTSAIVDSIG 626