Jatropha Genome Database

JcCA0316311.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316311.30 - phase: 0 /pseudo/partial
         (730 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30152.m002413 cohesin subunit rad21, putative                         561   e-160

>30152.m002413 cohesin subunit rad21, putative
          Length = 774

 Score =  561 bits (1447), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 316/537 (58%), Positives = 367/537 (68%), Gaps = 50/537 (9%)

Query: 198 PINQMEVPTGIVDL----PSTQTTVPMDTAEIQDLGPNNQTELQTGSPDFRDPGPSNQTE 253
           P +++EV +  VDL    P+  T V MD A++Q+  P+N+TELQT + DF++PGPSNQTE
Sbjct: 201 PSSRIEVTSETVDLQDSGPTNLTEVLMDFADLQETCPSNKTELQTQTLDFQEPGPSNQTE 260

Query: 254 VINSMLNDDNSPPEIEIMRDPVQGFSPEKLPSGFPDHQNDAFQPTTSFDQGLNEKEIPSP 313
           V+NS +N+DN PPEIE++RD V  FS E LP  F   QNDA +P  S DQGLNEK+ PSP
Sbjct: 261 VLNSAINNDNFPPEIEVLRDHVDVFSSENLPPVFTHQQNDASEPNISLDQGLNEKKTPSP 320

Query: 314 FKEDALPSGGQPSPFQRHSEAPEK--------FITDISFGNRSPELAIRSTXXXXXXXXX 365
           FKED +PSGGQ SPFQ+ SE+P          F + ISFG  SPELAIRST         
Sbjct: 321 FKEDVIPSGGQSSPFQQRSESPNSASRDAPGIFDSHISFGRVSPELAIRSTPAVQQPRPR 380

Query: 366 XXXXXHFFDESTVLTNK--------------RRKEIPSTALGIWKLNKNLRREQVLYEPS 411
                HFFDE+TVLTNK              +R+EIPSTALGIWKL  +LR+EQVL EP 
Sbjct: 381 TRKRKHFFDEATVLTNKFMKKALENSKDILRKRREIPSTALGIWKLRNSLRKEQVLSEPL 440

Query: 412 LTGYSANICNLFKRDYIITKSHLTLEREATPEPRVVTSPAPSTEAIAEARDANSPA---- 467
           LTG  A++CNL K DYI  K HLTLERE TPEPRV TS AP+ E I E RDA SPA    
Sbjct: 441 LTGSCADLCNLLK-DYISGKPHLTLEREVTPEPRVTTS-APAIEVIPEWRDATSPARSTV 498

Query: 468 ------------PATEVVIEDRDVASPAXXXXXXXXXXVAQSPASEAEPDLEIERLRHHE 515
                        ATE++ E R   SPA           AQ    E EPDLEIERLR HE
Sbjct: 499 AILESIAATSPTSATEMISESRTTTSPAPATENIPEPMFAQPSVPEVEPDLEIERLRQHE 558

Query: 516 GQDGNRLLPDSPARFIPSPGRFVSSPFRRDDFTPNTQKNLGSGSVPWAQTSIETEVMPTP 575
           G D N LLP+     +PSPGRF  SPFRRDDFTPN+ K+LGS +  WA TS  TEV+PTP
Sbjct: 559 GHDANILLPE----LLPSPGRFPPSPFRRDDFTPNSMKSLGSETAHWAGTSAGTEVLPTP 614

Query: 576 GVSASPGTCTTEPETPRTFLEDQFDLGHTGLSDIPESI--AETEDLYFLEADNTPAGSQG 633
            ++AS GT TT+ ETPRTFLE+QFD GHTGLSDIPE +  AE EDLYFLEADN+PAGS G
Sbjct: 615 DIAASTGTYTTDLETPRTFLEEQFDAGHTGLSDIPEFVNTAEAEDLYFLEADNSPAGSPG 674

Query: 634 TQSIDSLSVRSRAVAQYLKRHSLSTPLSGDQSRDLSLNKILQGKTRKLCARMFFETL 690
           +Q IDSLSVR+RAVAQYLKR+S  TP+S D S DLSLN+ILQGKTRKLCARMFFETL
Sbjct: 675 SQGIDSLSVRTRAVAQYLKRNSPITPVSEDLSGDLSLNRILQGKTRKLCARMFFETL 731