Jatropha Genome Database

JcCA0316311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316311.10 - phase: 0 /pseudo
         (254 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28693.m000103 Pre-rRNA-processing protein ESF1, putative               94   5e-20

>28693.m000103 Pre-rRNA-processing protein ESF1, putative
          Length = 722

 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 53/66 (80%)

Query: 40  RKVIADPRFVSVHYDPRFQKVSMLKSKVAIDSRFSRMFTDKNFQSSAAPLDKRGKVKKNK 99
           R+++ DPRF S+H DPRFQKV   ++KV IDSRFSRMFTDK+F SS+APLD RGK KK  
Sbjct: 39  RELMEDPRFASIHTDPRFQKVPKQRTKVEIDSRFSRMFTDKSFGSSSAPLDSRGKAKKQN 98

Query: 100 TENALR 105
           +E+ LR
Sbjct: 99  SESFLR 104



 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/26 (88%), Positives = 24/26 (92%)

Query: 204 VENIPTIEDGTRRLAVVNMDWRHVRV 229
           VENIPTIEDGT RLAVVN+DWRHVR 
Sbjct: 178 VENIPTIEDGTHRLAVVNLDWRHVRA 203