Jatropha Genome Database

JcCA0316161.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316161.20 - phase: 0 
         (204 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014357 conserved hypothetical protein                          226   4e-60

>30170.m014357 conserved hypothetical protein
          Length = 206

 Score =  226 bits (577), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 126/206 (61%), Positives = 143/206 (69%), Gaps = 2/206 (0%)

Query: 1   MKSDRRPPLAKSPIRLRPRRVLQXXXXX-VQTPPGSLTKSQKPNLTREMEESDLRSENHT 59
           MK DR+PPLAKSPIR+RP RVL+      +Q+PPGSL KSQK N   +MEE DLR E  +
Sbjct: 1   MKYDRKPPLAKSPIRVRPGRVLRSTTTTSLQSPPGSLIKSQKLNPGPDMEELDLRPEYRS 60

Query: 60  MSCELRALARMVQDELGNAXXXXXXXXXXXXXXXXPLFERGRFYEVYSARRNXX-XXXXX 118
           +S ELRALARMVQDE G                  PLFERGRFY+VYSARRN        
Sbjct: 61  ISWELRALARMVQDEFGKENATNAGERKSLSANSSPLFERGRFYDVYSARRNERLKRKTG 120

Query: 119 XXXXXXXXXPYHLGVTVESSKKRDSKKLESLRKSVSAAYSVERSANPRYSLRSLSKENKK 178
                    P++LGV +ESSKKRD+KKL+SLRKSVSAAYSVE S  PRYSLRSLSKENKK
Sbjct: 121 ETGEEGVKTPHNLGVNIESSKKRDTKKLQSLRKSVSAAYSVESSEIPRYSLRSLSKENKK 180

Query: 179 PPLPFNVEKSVCPSERKVGTRRVRKI 204
           PPLP N EKSV  +E+KVG RRVRK+
Sbjct: 181 PPLPVNYEKSVLANEKKVGARRVRKV 206