Jatropha Genome Database

JcCA0316141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316141.10 + phase: 0 /pseudo/partial
         (651 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29235.m000238 nucleic acid binding protein, putative                  334   6e-92
29838.m001726 Poly(rC)-binding protein, putative                      100   2e-21
29693.m001975 Poly(rC)-binding protein, putative                       74   3e-13
30170.m013634 Poly(rC)-binding protein, putative                       72   9e-13
28649.m000222 Poly(rC)-binding protein, putative                       58   1e-08
30205.m001575 Poly(rC)-binding protein, putative                       55   1e-07
29700.m000763 nucleic acid binding protein, putative                   52   1e-06
29813.m001513 nucleic acid binding protein, putative                   49   6e-06

>29235.m000238 nucleic acid binding protein, putative
          Length = 688

 Score =  334 bits (857), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 209/374 (55%), Positives = 243/374 (64%), Gaps = 49/374 (13%)

Query: 285 RSIEHEIEKGHPSVLIEGTSVTARLLVESDVVCCL--NGNGGEIDSKFTEGSGADIQILE 342
           RS+EH+IEKGHPS LIEG +VTARLLV SD VCCL   G  G IDS+  E SGADI+IL+
Sbjct: 357 RSVEHDIEKGHPSGLIEGATVTARLLVASDAVCCLIEKGGTGNIDSEMIEVSGADIRILD 416

Query: 343 GEQNSDCASENDVVIEITGEYKNVQNALFLVTRKLRDTLVPSELLDEAKLRSPNGRVVEV 402
           GEQ   CASE+DVVIEITGEYKNVQNALF+VT KLR               SP+      
Sbjct: 417 GEQIMACASEDDVVIEITGEYKNVQNALFMVTGKLRGL-------------SPD------ 457

Query: 403 ASPRXXXXXXXXXXXXREASLTSAMDQLGFSNSLCNASSLRLQLTQKFGKGSSAAIKNNE 462
                           +E SLT AM+QLGFS+S  NAS  RLQ  QKF +  + AIKN E
Sbjct: 458 --------------SDQETSLTRAMNQLGFSSSFNNASLPRLQSAQKFQREHTTAIKNQE 503

Query: 463 NSSTAFVGGSELERSLHFLLPKEVLNEVGAKSPSG-VRETACLELDLSIGQASGPMKVGA 521
           NS  AF GGS LERSLHFLLPKEVLNEVG +S SG VR+T       S G A GP++  +
Sbjct: 504 NSLQAFGGGSGLERSLHFLLPKEVLNEVGERSSSGGVRQTTSSGSHSSSGLAPGPIQDTS 563

Query: 522 TSPSLHMPPFMLFFVIALSNWMYITWVHLQTVERSS---KMFGRSMELESSCSRKRSN-V 577
            +  ++ P         LSN +      L   ++++   K FGR  ELES  SRKRS  V
Sbjct: 564 LTRGINQP--------QLSNNIDFPSPALHMPQQTAGRGKTFGRGAELESY-SRKRSPIV 614

Query: 578 ANSVVELLVSEDIIGSVFGEDGGNLTRLRQISGAKVEVCDPSPGKNDRTVVISGTPDQTR 637
            N+++EL+V ED IGSV+GEDG NL RLRQISGAKVEV +PS GK+ R VVISGTPDQT 
Sbjct: 615 VNTIIELVVPEDTIGSVYGEDGSNLARLRQISGAKVEVREPSSGKSGRIVVISGTPDQTN 674

Query: 638 AAQSLFQAFILAYQ 651
           AAQSL QAFILA Q
Sbjct: 675 AAQSLLQAFILADQ 688


>29838.m001726 Poly(rC)-binding protein, putative
          Length = 698

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 64/86 (74%)

Query: 566 LESSCSRKRSNVANSVVELLVSEDIIGSVFGEDGGNLTRLRQISGAKVEVCDPSPGKNDR 625
           LE     K + V N+ VE+ V E++IGSV+GE+  NLTRLRQISGAKV V +P  G +DR
Sbjct: 611 LELGSGSKSAIVTNTTVEIRVPENVIGSVYGENDSNLTRLRQISGAKVIVHEPRLGSSDR 670

Query: 626 TVVISGTPDQTRAAQSLFQAFILAYQ 651
            +VISGTPD+T+AAQSL QAFIL  Q
Sbjct: 671 IIVISGTPDETQAAQSLLQAFILTGQ 696



 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 54/82 (65%)

Query: 305 VTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEITGEYK 364
           V +RL+V S+ V CL G GG I S   + +G  I+IL G+Q   C  EN+ V++I+G++ 
Sbjct: 374 VFSRLVVPSNQVGCLLGKGGIIISDMRKTTGTSIKILAGDQLPKCVPENEQVVQISGDFM 433

Query: 365 NVQNALFLVTRKLRDTLVPSEL 386
           NV++A++ VT +LRD L  S L
Sbjct: 434 NVKDAVYHVTGRLRDNLFSSAL 455


>29693.m001975 Poly(rC)-binding protein, putative
          Length = 462

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 48/70 (68%)

Query: 580 SVVELLVSEDIIGSVFGEDGGNLTRLRQISGAKVEVCDPSPGKNDRTVVISGTPDQTRAA 639
           S +E+LV  + +G V G+ G N+  +R+ISGA +E+ D    + DR   ISGTP+Q RAA
Sbjct: 392 STLEMLVPANAVGKVLGKGGANIANIRKISGAMIEISDAKSARGDRIAHISGTPEQKRAA 451

Query: 640 QSLFQAFILA 649
           ++L QAFI+A
Sbjct: 452 ENLIQAFIMA 461



 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)

Query: 301 EGTSVTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEIT 360
           +  +V+ RLLV   V+ C+ G  G I ++    + ADI+I +G Q   CA  +D ++E+ 
Sbjct: 222 DDDTVSIRLLVPCKVIGCIIGKSGSIINEIRRRTKADIRISKG-QKPKCADSSDELVEVL 280

Query: 361 GEYKNVQNALFLVTRKLRD 379
           GE  +V++AL  +  +LRD
Sbjct: 281 GEVGSVRDALVQIVLRLRD 299


>30170.m013634 Poly(rC)-binding protein, putative
          Length = 679

 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 43/56 (76%)

Query: 594 VFGEDGGNLTRLRQISGAKVEVCDPSPGKNDRTVVISGTPDQTRAAQSLFQAFILA 649
           ++GEDG  L ++RQIS AK+ V +P PG  +  ++ISGTP+QT AAQSL QAF+++
Sbjct: 619 IYGEDGACLKQIRQISDAKITVTEPKPGAAETVIIISGTPEQTHAAQSLIQAFVMS 674



 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 51/76 (67%)

Query: 304 SVTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEITGEY 363
           +V  RLLV S+ + CL G GG I ++  + +GA I+IL  +Q   CASEN+ V++I GE+
Sbjct: 407 AVIGRLLVSSNQIGCLLGKGGAIMAEMRKSTGAYIRILGKDQIPKCASENEEVVQINGEH 466

Query: 364 KNVQNALFLVTRKLRD 379
           + VQ AL  +T +LR+
Sbjct: 467 EVVQEALLQITTRLRN 482



 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 42/72 (58%)

Query: 306 TARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEITGEYKN 365
           T RLLV S  V CL G GG +  + +  SGA I+IL  ++   CAS  D +++I GE   
Sbjct: 180 TLRLLVLSSQVGCLLGKGGSVIKQMSAESGAQIRILPRDKLPICASPTDELVQIAGEVDA 239

Query: 366 VQNALFLVTRKL 377
           ++ AL  V ++L
Sbjct: 240 IRKALQSVAQQL 251


>28649.m000222 Poly(rC)-binding protein, putative
          Length = 405

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 46/78 (58%)

Query: 302 GTSVTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEITG 361
           G  VTARL+V SD + C+ G GG+I       +GA I+IL+ E    CA   D +++I+G
Sbjct: 10  GHQVTARLIVPSDQIGCIIGKGGQIVQNIRSETGAQIRILKDEHLPPCALSTDELVQISG 69

Query: 362 EYKNVQNALFLVTRKLRD 379
           E   V+ AL+ +  +L +
Sbjct: 70  EVAVVKKALYQIATRLHE 87



 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 47/75 (62%)

Query: 304 SVTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEITGEY 363
           S T RLLV +  + CL G GG I ++  + + A+I+IL  +     ASE+D +++I+G+ 
Sbjct: 240 SFTTRLLVPTSRIGCLLGKGGVIINEMRKVTKANIRILGKDNLPKVASEDDEMVQISGDL 299

Query: 364 KNVQNALFLVTRKLR 378
              ++AL  V+R+LR
Sbjct: 300 DVAKDALTHVSRRLR 314


>30205.m001575 Poly(rC)-binding protein, putative
          Length = 537

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 49/78 (62%)

Query: 301 EGTSVTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEIT 360
           E  ++T RLLV S  V C+ G GG++ ++    + ADI++   ++   CASE++ +++I+
Sbjct: 391 EKGTITTRLLVPSSKVGCILGQGGQVINEMRRRTQADIRVYSKDEKPKCASEDEELVQIS 450

Query: 361 GEYKNVQNALFLVTRKLR 378
           G++   ++AL  +  +LR
Sbjct: 451 GKFGVAKDALAEIASRLR 468


>29700.m000763 nucleic acid binding protein, putative
          Length = 704

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 305 VTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEITGEYK 364
           +  +L+V S  + CL G  G + S+    +GA IQIL  E+   C SE D +++I GE K
Sbjct: 428 IKTKLIVSSGEIGCLEGRDGSL-SEMERLTGAKIQILPREKLPACVSEADELVQIEGEIK 486

Query: 365 NVQNALFLVTRKLRDTL 381
             ++AL  VT +LR  L
Sbjct: 487 AARDALVEVTSRLRSYL 503


>29813.m001513 nucleic acid binding protein, putative
          Length = 559

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 42/77 (54%)

Query: 305 VTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEITGEYK 364
           +T RLLV    + CL G GG I S+    + A I+IL  +     ASE+D +++ITG + 
Sbjct: 382 ITTRLLVPRSQIGCLMGKGGAIISEMRNVTRASIRILAEDNLPKVASEDDEMVQITGSHD 441

Query: 365 NVQNALFLVTRKLRDTL 381
              NAL  V  +L+  L
Sbjct: 442 VASNALLHVVLRLKANL 458