Jatropha Genome Database

JcCA0315891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0315891.10 - phase: 0 /partial
         (145 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29742.m001366 pentatricopeptide repeat-containing protein, putative    55   1e-08

>29742.m001366 pentatricopeptide repeat-containing protein, putative
          Length = 544

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 71  PARVQKLIASQSDALLAKEIFDYASR-QPNFRHSYSSYLVLILKLGRSKYFSLIDEILID 129
           P R+  +I  Q +  LA +IF+YA + QPNF H+Y +Y  +I KL R++ F  ++ +L D
Sbjct: 61  PKRLVSMITRQQNLDLALQIFEYAGKYQPNFSHNYDTYDSIIHKLSRARVFGPVELLLSD 120

Query: 130 LKSKHYVVKSNVF 142
           L         N+F
Sbjct: 121 LHKSQIKCGENIF 133