Jatropha Genome Database

JcCA0315721.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0315721.20 + phase: 0 
         (143 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28153.m000275 conserved hypothetical protein                          134   2e-32
28153.m000276 hypothetical protein                                     57   2e-09

>28153.m000275 conserved hypothetical protein
          Length = 143

 Score =  134 bits (337), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 95/149 (63%), Gaps = 12/149 (8%)

Query: 1   MAETKLPVITILTAFFFSLLISMGKVVNGIPPQPSQRPLCVSQFALANYACSRMP----- 55
           M   K+  IT+LTAF    L+ M +V+ GIP QPS RPLCVSQ  LANYAC R+P     
Sbjct: 1   MERIKVLAITLLTAF----LMFMPQVI-GIPQQPSNRPLCVSQLTLANYACGRLPLWSSG 55

Query: 56  -PSPASDIFFXXXXXXXXXXXXXXXXXXXXXXXSAVENCCRWLSDVDNECVCDLLIRLPI 114
             +P+S++ F                       + V++CCRWL+D+D+EC+C+LL+RLP 
Sbjct: 56  PETPSSNLVFPDDHRHGHRHRRRSEGKDHDHD-TPVDDCCRWLNDLDDECICELLVRLPP 114

Query: 115 FLARPAHQFTIVIGDTCTITFSCSGRVRP 143
           FLARP HQ+T+VI D C +T++CSGRVRP
Sbjct: 115 FLARPLHQYTVVIADACNVTYTCSGRVRP 143


>28153.m000276 hypothetical protein
          Length = 243

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 34/50 (68%)

Query: 91  ENCCRWLSDVDNECVCDLLIRLPIFLARPAHQFTIVIGDTCTITFSCSGR 140
           + CC  L+D+D+EC C LL+ LP   +R AH + I + ++C+++F C GR
Sbjct: 192 KECCDLLNDIDDECACLLLVHLPPAFSRLAHTYNIYVDESCSVSFKCEGR 241