Jatropha Genome Database

JcCA0315721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0315721.10 + phase: 0 
         (200 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28153.m000275 conserved hypothetical protein                           88   2e-18
28153.m000276 hypothetical protein                                     74   4e-14

>28153.m000275 conserved hypothetical protein
          Length = 143

 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 36/54 (66%), Positives = 45/54 (83%)

Query: 143 TAQQNCCRWLNELDDECVCELLVRLPPFLSRPAHVYTLYLDESCNVTYACQGRI 196
           T   +CCRWLN+LDDEC+CELLVRLPPFL+RP H YT+ + ++CNVTY C GR+
Sbjct: 88  TPVDDCCRWLNDLDDECICELLVRLPPFLARPLHQYTVVIADACNVTYTCSGRV 141


>28153.m000276 hypothetical protein
          Length = 243

 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 40/61 (65%)

Query: 137 SNPRELTAQQNCCRWLNELDDECVCELLVRLPPFLSRPAHVYTLYLDESCNVTYACQGRI 196
               E   Q+ CC  LN++DDEC C LLV LPP  SR AH Y +Y+DESC+V++ C+GR 
Sbjct: 183 GGGHESYLQKECCDLLNDIDDECACLLLVHLPPAFSRLAHTYNIYVDESCSVSFKCEGRF 242

Query: 197 I 197
            
Sbjct: 243 F 243



 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 31/42 (73%), Gaps = 1/42 (2%)

Query: 6  VINTLMLMLVASFLGLQLKIEAQPFPRPLCVSQFALVNYACS 47
          +  T MLM+  SFL L LK++AQPF RPLC +QFA  NYAC+
Sbjct: 3  MFKTHMLMIF-SFLLLVLKMQAQPFHRPLCTTQFARANYACT 43