Jatropha Genome Database

JcCA0315581.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0315581.30 - phase: 0 /TE/partial
         (333 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29674.m000206 conserved hypothetical protein                          241   3e-64

>29674.m000206 conserved hypothetical protein
          Length = 496

 Score =  241 bits (616), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 154/380 (40%), Positives = 209/380 (55%), Gaps = 54/380 (14%)

Query: 1   VQTFYNALSPNIKITLDVAVGRSFERKGIDEAYDLIEEMA-SNSHYQSNFERKKTAGVY- 58
           VQTFY+ L+   +  +D A G +   K  ++A +LIEEMA +N+ +QS+  R    GV  
Sbjct: 26  VQTFYSGLNLATRQMVDAAAGGALNNKTPEQAQNLIEEMAMNNNQWQSSRSRPGRQGVVN 85

Query: 59  EIDATTAINAKVDNMVRKLDLLTTNPVNSIMQLCDRCNGQHGIGEC------------MI 106
           ++D+T A+ A+V+ + +K+D L T PV++    C+ C   H    C            + 
Sbjct: 86  QVDSTAALAAQVELLAKKIDQLQT-PVHAANVGCEFCGSPHYSVNCTAGGKKLTGSSPLA 144

Query: 107 DSLNPQTLEQV-------------NYVMNQGRKSYPYSNS-----YDNRLRNHP------ 142
           D  N  T+ QV             N  M + R+  P         Y  RLR         
Sbjct: 145 DKDN--TIVQVEPAKEGPDFKVVENERMKEDRQKSPVREHQPPVPYPARLRQDKVDKQYS 202

Query: 143 -----------NLSYGXXXXXXXXXXGFIP--LSKKRKIDDQGTVMLTEECSAIIQNKLP 189
                      NL +            F+   LS  RK++D G V+L EECSAI+QNKLP
Sbjct: 203 KFLDLFKQLKINLPFVEAISQMAKYAKFLKEILSNNRKLEDLGQVVLNEECSAILQNKLP 262

Query: 190 PKLKDPRSFSIPCNIGNLDFEKALADLGAGINLMSYGVFKMLGMGELKPTMMSLQLVDRS 249
            K +D  SF+IPC IG+L    ALADLGA INLM   +F  LG+ E KPT MS+QL DR+
Sbjct: 263 LKRRDLESFTIPCMIGDLSISGALADLGASINLMPTSLFAKLGLHEPKPTRMSVQLADRT 322

Query: 250 IKYPRGIVEDVLVKVGTFIFPVDFVILDIDEDREGSLILGRPFLATARALIDVYEGKLTL 309
           +K PRGI+EDVL+KV  FIFPVDFV++D++ +    LILGRPFLAT+RA+IDV +GKL L
Sbjct: 323 VKIPRGIIEDVLIKVDKFIFPVDFVVMDMEGESTVPLILGRPFLATSRAVIDVSDGKLKL 382

Query: 310 RVGQEEIIFDVLKSCKLPMD 329
           RV  E I FD+  S +  +D
Sbjct: 383 RVDDETITFDLATSMRQSLD 402