Jatropha Genome Database

JcCA0315371.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0315371.20 - phase: 0 /partial
         (175 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29848.m004496 Protein ABC1, mitochondrial precursor, putative         250   2e-67

>29848.m004496 Protein ABC1, mitochondrial precursor, putative
          Length = 732

 Score =  250 bits (639), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 121/174 (69%), Positives = 143/174 (82%)

Query: 1   VAAISEQASESTGEAAKSEENPSDTLEWKSFDIRAVVSATEDLLLFILSEKGSRVRVFLV 60
           + AISEQASESTGEA KSEE+ ++   WKSFD+R+VV ATEDLLLFILSEKG RVRVFL+
Sbjct: 554 ILAISEQASESTGEAPKSEEDLTNPFGWKSFDMRSVVGATEDLLLFILSEKGWRVRVFLI 613

Query: 61  RDIIKVADVFLRDKIVGCILDQKREGNEASKSEGHSTFMRVVNGFQYLRQAVKLAPELWT 120
           RD+IKV D FL D++VGCI D+K E +EASKSE HS  MRVV+GFQYLRQAVKLAPE+WT
Sbjct: 614 RDLIKVVDAFLEDEVVGCISDEKYEASEASKSESHSMVMRVVDGFQYLRQAVKLAPEMWT 673

Query: 121 AMLIRMALKPEFHSFILDIMSALVVHFNHKVPETSWVFMSRLLHKLVRNDRLDD 174
            MLIR+ LKPE  +F LDI+SAL +H +HK+PE  W  MS++LHKL RN R DD
Sbjct: 674 VMLIRLTLKPESRAFTLDIISALTLHLSHKLPENFWNSMSKILHKLERNYRFDD 727