Jatropha Genome Database

JcCA0314681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0314681.10 - phase: 0 
         (187 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28320.m001107 conserved hypothetical protein                          286   5e-78

>28320.m001107 conserved hypothetical protein
          Length = 187

 Score =  286 bits (731), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 143/187 (76%), Positives = 149/187 (79%)

Query: 1   MSGGSPVGGGYMRQRHSQGYASGGDDLEDDACXXXXXXXXXXXXXXXWVEIVENVLWIAS 60
           MSGGSPVGGGYMRQRHSQGYASGGDDLEDDAC               WVEIVENVLWIAS
Sbjct: 1   MSGGSPVGGGYMRQRHSQGYASGGDDLEDDACSRPQPFSTPSPRVRSWVEIVENVLWIAS 60

Query: 61  AIFIVYFGDRHSNLIYLLWHDERIRRLPLYLGMVGAGVNLVIFLYTSMFTWGVRRFDEKW 120
           AIFIVYFGDRH NLIYLLWHD RIRRLPLYLGM+G G+N+VIF YTS+F W VRRFDEKW
Sbjct: 61  AIFIVYFGDRHCNLIYLLWHDGRIRRLPLYLGMIGVGLNVVIFFYTSVFAWSVRRFDEKW 120

Query: 121 ELSSISALPLVTLLGLVSFCLLSFALWPVWSXXXXXXXXXXXMASMVICPHIMIVTFRQQ 180
           ELSSISALPLVTLLGLVSF L SFALWP+WS           MA MVI PHIMI TF+Q 
Sbjct: 121 ELSSISALPLVTLLGLVSFSLFSFALWPIWSFLTLPLLFTLFMACMVIFPHIMIGTFKQP 180

Query: 181 NDTFRID 187
           NDTFRID
Sbjct: 181 NDTFRID 187