Jatropha Genome Database

JcCA0314481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0314481.10 + phase: 0 
         (355 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29739.m003667 conserved hypothetical protein                          444   e-125

>29739.m003667 conserved hypothetical protein
          Length = 231

 Score =  444 bits (1141), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 211/230 (91%), Positives = 218/230 (94%), Gaps = 1/230 (0%)

Query: 127 TSARYINGHETCQGGKPLGFPDYPLTGKIVVAVDVDEVLGNFVSALNRFIADRYSSNHSV 186
           T+ARYINGH TCQGGKPLGFPDYP+TG IVVAVDVDEVLGNFVSALNRFIADRYSSNHSV
Sbjct: 2   TNARYINGHGTCQGGKPLGFPDYPITGNIVVAVDVDEVLGNFVSALNRFIADRYSSNHSV 61

Query: 187 AEYHVYEFFKIWKCSHDEANIRVHEFFKTSYFKSGIYPIPGAQKVLHKLSRLCNLSVVTS 246
           +EYHVYEFFKIW CS DEA+IRVHEFFKTSYFKSGIYPIPGAQKVL KLSRLC LSVVTS
Sbjct: 62  SEYHVYEFFKIWNCSRDEADIRVHEFFKTSYFKSGIYPIPGAQKVLQKLSRLCKLSVVTS 121

Query: 247 RQNVIKDHTIEWIEKHYPGVFHEIHFGNHFALDGESRPKSEICRTLGATVLIDDNPRYAI 306
           RQNVIKDHT+EWIEKHYPGVF EIHFGNHFALDGESRPKSEICR+LGATVLIDDNPRYAI
Sbjct: 122 RQNVIKDHTVEWIEKHYPGVFQEIHFGNHFALDGESRPKSEICRSLGATVLIDDNPRYAI 181

Query: 307 ECAEAGIKVLLFDYENSYPWCKTDLV-RHPLVTKVHNWEQVEQQLISWIS 355
           ECAE GIKVLLFDYENSYPWCK D V +HPLVTKV NWEQVEQQLISWIS
Sbjct: 182 ECAEVGIKVLLFDYENSYPWCKADSVDQHPLVTKVCNWEQVEQQLISWIS 231