Jatropha Genome Database

JcCA0314181.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0314181.20 - phase: 0 /partial
         (392 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29904.m002982 dihydroxy-acid dehydratase, putative                    674   0.0  

>29904.m002982 dihydroxy-acid dehydratase, putative
          Length = 615

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/392 (83%), Positives = 355/392 (90%)

Query: 1   VYGEYVNGSISDEGRKNVVRNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAESP 60
           VYGEYV+GSISDE R+NVVRNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAE+ 
Sbjct: 224 VYGEYVSGSISDEDRRNVVRNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAENQ 283

Query: 61  LKLDECRLAGKYLLELLKMDLKPRDIITRQSLRNAMVIVMALGGSTNAVLHLIAIARSVG 120
           LKLDECRLAGKYLLELL+MDLKPRDIITR+SLRNAMV+VMALGGSTNAVLHLIAIARSVG
Sbjct: 284 LKLDECRLAGKYLLELLRMDLKPRDIITRKSLRNAMVVVMALGGSTNAVLHLIAIARSVG 343

Query: 121 LELKLDDFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVLRYLLERGFLDGDCLTVTG 180
           LEL LDDFQKVSDEVPFLADLKPSGKYVMED+HKIGGTPAV+RYLLE GF+DGDCLTVTG
Sbjct: 344 LELTLDDFQKVSDEVPFLADLKPSGKYVMEDLHKIGGTPAVIRYLLEHGFMDGDCLTVTG 403

Query: 181 KTLAENVQNCPPLSEGQDIIRSLENPIKKTGHIQILRGNLAPEGSVAKITGKEGLYFSGP 240
           KTLAENV+NCPPL+EGQDIIR+LENPIKKTGH+QILRGNLAPEGSVAKITGKEGLYFSGP
Sbjct: 404 KTLAENVRNCPPLAEGQDIIRALENPIKKTGHLQILRGNLAPEGSVAKITGKEGLYFSGP 463

Query: 241 ALVFEGEEAMIRAITENPKNFKGKVVVIRXXXXXXXXXXXXXLTPTSAIMGAGLGKDCAL 300
           AL+FEGEEAMI AI+E+P +FKGKVVVIR             LTPTSAIMGAGLGKDCAL
Sbjct: 464 ALIFEGEEAMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKDCAL 523

Query: 301 LTDGRXXXXXXXXXXXXXCPEAQEGGPIGLLRNGDTIKIDVQERRIDVELTDKEMEERRK 360
           LTDGR             CPEAQEGGPIGL+RNGD I +DV+ERRIDV+LTD+E+ ER++
Sbjct: 524 LTDGRFSGGSHGFVVGHICPEAQEGGPIGLIRNGDIINVDVRERRIDVQLTDQELAERKR 583

Query: 361 NWSPPPYKATCGVLYKYIKNVCSASRGCVTDE 392
           NW+PPPYKAT GVLYKYIKNV SAS+GCVTDE
Sbjct: 584 NWTPPPYKATGGVLYKYIKNVQSASKGCVTDE 615