Jatropha Genome Database

JcCA0314181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0314181.10 - phase: 0 /partial
         (554 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29904.m002981 hypothetical protein                                    570   e-163

>29904.m002981 hypothetical protein
          Length = 791

 Score =  570 bits (1469), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 327/562 (58%), Positives = 386/562 (68%), Gaps = 22/562 (3%)

Query: 1   MEEMDIEQVVDVPDTPDRIIAH----AQLGRESNSSAAAHSRTSDFRDKECLNKLGVSSR 56
           MEEMD EQVV++PDTPDRI A       LG+ESNS AA  SRTSD   KE LN+L    R
Sbjct: 1   MEEMDTEQVVEIPDTPDRITARRINDLHLGKESNSYAAGPSRTSDLSSKESLNQLRARGR 60

Query: 57  LVGESGHDRRLRLNRQGVPVNMDELKPRNKSIAFSPSENFYPSKNIPLFRRGAMVNDSKP 116
           LV E+G  R L LN   +PV  DEL+PRN+SIAFSP  N +PS+N PLFRRGA+ N+SK 
Sbjct: 61  LVSENGFSRSLHLNPGRIPVKTDELEPRNRSIAFSPLRNSHPSRNAPLFRRGAVTNNSKT 120

Query: 117 ET-HNIGMRSRDKGKAEHIKMPSKQPLYLEKDALFDMAFPRSASKSLQAQETRDVQISSN 175
           ET H+I M+   KGKAE   +PSK P+ +  + LFDMAFPR ASK+L A+ETRDVQ+SSN
Sbjct: 121 ETQHSIRMQQLGKGKAEFANIPSKLPVLINDEVLFDMAFPRGASKALHAKETRDVQVSSN 180

Query: 176 GESSLHFSRMTSSNSLKGKEKIGVSSCNGSGSAINHGKEVDLNSVSQPKVEKQMSASHLA 235
             SS HF+    SN  KGKEK+ V++CNGS SA+NHGK +DL   S  K+EKQ SASHL+
Sbjct: 181 SGSSSHFAPEIPSNLFKGKEKVDVNACNGSDSALNHGKGIDLTGSSPHKIEKQASASHLS 240

Query: 236 VTSPRVTGQKRLVRNGCISPHNIASRAQRLAERLRVGSADIGKYHSSNMVSDGPPTVDIK 295
           VTSPRVTG KRLVRNGCISPHNIA+R Q+LAE  +  S D+G   S N+VSDGP  VDI+
Sbjct: 241 VTSPRVTGHKRLVRNGCISPHNIATRQQKLAESRQDCSIDVGTDDSKNIVSDGPSEVDIR 300

Query: 296 EVVA----EENNCHRAKGKGLVLHSSKSKEHDAKVANVSTSSGPNNKAPN----ESRDAL 347
           E++     EENN +RAKGKGLV + S S E+DA++ +VSTSS   NKA N     SRDA 
Sbjct: 301 EIIVGEKNEENNHYRAKGKGLVTYPSTSTENDAQIFHVSTSSRIENKAANVTSDTSRDAS 360

Query: 348 LGGWRSTRNRGKKMYYPDDEDGCFGDEQLE----RRDNGNGNFTSNGGDSTDQGEGQTAS 403
           LGGWRSTRN  KK+Y+ DDE     DEQ E    RR+ G  N   N  +S D+ + QTAS
Sbjct: 361 LGGWRSTRNHAKKLYHADDE--FSADEQHENRVARRNTGTAN-VKNVHESGDRVQAQTAS 417

Query: 404 RHVSGHNQTSQPHHIGNGHTKRQKKRALTLRNHSECSSIVPDDXXXXXXXXXXXXXXXXX 463
           RHVSG NQT++PHHIGN HTKRQKK  LT RN  E S+ VPDD                 
Sbjct: 418 RHVSGLNQTNRPHHIGNIHTKRQKKYGLTSRNDGEYSTTVPDDSEIMLLGSSDESSRSRS 477

Query: 464 XXTLNRQHQGILDPIYEIDDESFTEMRNGNSQGLGSVND-DSDARARQVEADEMLARELQ 522
             T  RQ +GIL PIYE+ DES  E R G+SQGL S ND ++DARARQVEADEMLARELQ
Sbjct: 478 SRTSYRQRRGILHPIYEV-DESLPERRTGSSQGLSSENDIEADARARQVEADEMLARELQ 536

Query: 523 EQLYHEVPVFGGSEVCFLLNWI 544
           EQLY E P  GGSE+     W+
Sbjct: 537 EQLYQETPASGGSEIDEDAAWL 558