Jatropha Genome Database

JcCA0314071.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0314071.20 - phase: 1 /pseudo/partial
         (169 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014078 similarity to nuclear protein zap, putative             206   4e-54

>30147.m014078 similarity to nuclear protein zap, putative
          Length = 676

 Score =  206 bits (524), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 108/148 (72%), Positives = 121/148 (81%), Gaps = 3/148 (2%)

Query: 23  KRWGVEEDHPTQGVKELGKSKWSNDLDEDDIEGSERMKGNLNALSGLIQAYGKQGKSVRW 82
           KRW  E+DHP  G+KEL KSKWS+DLDEDD + S   K +++ALSGLIQAYGKQGKS+RW
Sbjct: 530 KRWDAEKDHPEGGMKELLKSKWSHDLDEDDADRSAGAKSDVSALSGLIQAYGKQGKSLRW 589

Query: 83  SDQVGNTGFSIGAAKKAQMLSLVIGPGAGYNLKSNPLPEDEAITTAKA--ESRRQSAFQE 140
           SDQVGNTGFSIGAAKK    SLVIGPGAGYNLKSNPLP+D   T+ +   E R QS FQE
Sbjct: 590 SDQVGNTGFSIGAAKKTSK-SLVIGPGAGYNLKSNPLPKDGGPTSTRGIEELRGQSVFQE 648

Query: 141 RLRAEHESFKAVFDKRKRRIGRLDLEEE 168
           RLRAE ESFKAVFDKR+RRIG L+LEEE
Sbjct: 649 RLRAERESFKAVFDKRRRRIGGLNLEEE 676