Jatropha Genome Database

JcCA0313951.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313951.20 + phase: 0 /pseudo
         (171 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006221 Vacuolar protein sorting-associated protein VPS9, ...   282   6e-77

>29908.m006221 Vacuolar protein sorting-associated protein VPS9,
           putative
          Length = 477

 Score =  282 bits (721), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 131/144 (90%), Positives = 141/144 (97%)

Query: 1   MESADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSALVQDFLAKMEAA 60
           ME+ADVFLGLHDFLERMRQPSA+DFVKSIKSFIVSFSNNAPDPERDSALVQ+FLA MEAA
Sbjct: 1   MENADVFLGLHDFLERMRQPSASDFVKSIKSFIVSFSNNAPDPERDSALVQEFLANMEAA 60

Query: 61  FRAHPLWAGCSDEELESAGEGLEKYVMTKLFTRVFASIPDDVKVDEQLSEKMSLIQQFIR 120
           FRAHPLWAGCSD+ELESAGEGLEKYVMTKLFTRVFAS+PDDVK DEQLSEKMSLIQQFIR
Sbjct: 61  FRAHPLWAGCSDDELESAGEGLEKYVMTKLFTRVFASLPDDVKADEQLSEKMSLIQQFIR 120

Query: 121 PENLDIKPTFQNETSWLVSRKDIQ 144
           PENLDIKP FQNETSWL+++K++Q
Sbjct: 121 PENLDIKPPFQNETSWLLAQKELQ 144