Jatropha Genome Database

JcCA0313811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313811.10 - phase: 0 /partial
         (169 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30009.m000840 U3 small nucleolar RNA-interacting protein, putative    241   8e-65

>30009.m000840 U3 small nucleolar RNA-interacting protein, putative
          Length = 572

 Score =  241 bits (616), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 116/144 (80%), Positives = 125/144 (86%)

Query: 1   VPEESRLIFRASASSLECCCFIDNDEFLSGSDDGNIEVWGMQKKKPVYIVRNAHALFTDN 60
           VPEESRLIFR+SASSLECCCFIDNDEFLSGSDDGNIE+W  QKKKPVYIV+NAHAL  D 
Sbjct: 333 VPEESRLIFRSSASSLECCCFIDNDEFLSGSDDGNIELWTAQKKKPVYIVKNAHALLIDP 392

Query: 61  TNLEQKENGSIFNGDKACSWVSSVTVCRGSDLAASGAGNGSVHLWAIESAPACIRPLYDV 120
            N EQK+N S+ +G  ACSWVSSV VC GSDLAASGAGNGSV LWAI+ AP  IRPLYD+
Sbjct: 393 KNPEQKDNASLSSGPIACSWVSSVAVCTGSDLAASGAGNGSVRLWAIDGAPKGIRPLYDL 452

Query: 121 PLVGFVNSLAFSKSGEFLVAGVGQ 144
           PLVGF+NSLAFSKSG FL AGVGQ
Sbjct: 453 PLVGFINSLAFSKSGRFLAAGVGQ 476