Jatropha Genome Database

JcCA0313541.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313541.20 - phase: 0 /pseudo
         (469 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004506 acetolactate synthase, putative                         378   e-105
29678.m000505 acetolactate synthase, putative                         345   2e-95

>29929.m004506 acetolactate synthase, putative
          Length = 531

 Score =  378 bits (971), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/257 (76%), Positives = 210/257 (81%), Gaps = 9/257 (3%)

Query: 62  QWHTISVFIGDESGIINRIAGVFARRGYNIESLAVGLNKDKALFTIVVRGTDKVLQQVIE 121
           Q HTISVF+GDESGIINRIAGVFARRG+NIESLAV LN+DKALFTIVVRGTD VL+QV+E
Sbjct: 124 QTHTISVFVGDESGIINRIAGVFARRGFNIESLAVCLNEDKALFTIVVRGTDNVLRQVVE 183

Query: 122 QLNKLVNVIKVEDISREPQVERELMLLKLNVDPSTHPEIMXLVDIFRTKVVDISEHTLTI 181
           QLNKLV+VIKVEDISREPQVERELML+KLN DP T  EIM LVDIFR KVVDISEHTLTI
Sbjct: 184 QLNKLVSVIKVEDISREPQVERELMLIKLNADPMTRHEIMWLVDIFRAKVVDISEHTLTI 243

Query: 182 EVTGDPGKMAAVLRNLSNFRIEELT----IALRRERMRETAPFWRFSAASYPDLERTQPG 237
           EVTGDPGKMAAVLRNLS FRI+EL+    IALRRERM ETAPFWRFSAASYPDLER QPG
Sbjct: 244 EVTGDPGKMAAVLRNLSKFRIKELSRTGKIALRRERMGETAPFWRFSAASYPDLERMQPG 303

Query: 238 DAFXXXXXXXXXXXXXXXXXXXXXXXXXXDVYPVEPYDDYSMNQVLDAHWGVLYDEDSSG 297
           +A                           DVYPVE  DD+S+NQVLDAHWGVLYDEDS+G
Sbjct: 304 NAL---FSNPVKENSSGSLNGSTVSSSKGDVYPVE--DDFSVNQVLDAHWGVLYDEDSTG 358

Query: 298 SQSHTLSMLVNDSPGVL 314
             SHTLSMLVNDSPGVL
Sbjct: 359 FWSHTLSMLVNDSPGVL 375



 Score =  133 bits (334), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 130/227 (57%), Gaps = 19/227 (8%)

Query: 6   FEKWFPGRSFASLQFFRSPRTSNVVVKVSGAAISKDNGNAVPV-----------AEAPVP 54
            E+  PG +      F +P   N    ++G+ +S   G+  PV           A   V 
Sbjct: 297 LERMQPGNAL-----FSNPVKENSSGSLNGSTVSSSKGDVYPVEDDFSVNQVLDAHWGVL 351

Query: 55  FFALSKGQW-HTISVFIGDESGIINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVRG 111
           +   S G W HT+S+ + D  G++N I GV +RRGYNI+SLAVG  + + L   T V+ G
Sbjct: 352 YDEDSTGFWSHTLSMLVNDSPGVLNMITGVISRRGYNIQSLAVGSAEREGLSRITTVIPG 411

Query: 112 TDKVLQQVIEQLNKLVNVIKVEDISREPQVERELMLLKLNVDPSTHPEIMXLVDIFRTKV 171
           T++ + +++ QL+KL+++ +V DI+  P  ERELML+K+ V+ +   +++ +  IFR K 
Sbjct: 412 TNESIGKLVLQLHKLIDMHEVRDITHVPFAERELMLIKIAVNTAARRDVLDIASIFRAKA 471

Query: 172 VDISEHTLTIEVTGDPGKMAAVLRNLSNFRIEELTIALRRERMRETA 218
           VD+S+HT+T+E+TGD  KMAA+   L  + I E+    R   +RE+ 
Sbjct: 472 VDVSDHTITLELTGDLNKMAALQTVLEPYGICEVARTGRVALVRESG 518


>29678.m000505 acetolactate synthase, putative
          Length = 493

 Score =  345 bits (886), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 186/294 (63%), Positives = 211/294 (71%), Gaps = 14/294 (4%)

Query: 33  VSGAAISKDNGNAVPVAEAPVPFFA-LSKGQWHTISVFIGDESGIINRIAGVFARRGYNI 91
           VS  A S  + + V  +   VP  A LSK + HTISVF+GDESG+INRIAGVFARRGYNI
Sbjct: 60  VSATADSHKD-DTVLSSNGSVPAAATLSKVRRHTISVFVGDESGMINRIAGVFARRGYNI 118

Query: 92  ESLAVGLNKDKALFTIVVRGTDKVLQQVIEQLNKLVNVIKVEDISREPQVERELMLLKLN 151
           ESLAVGLNKDKALFTIVV GT++VLQQV+EQL KLVNV+KVED+S EPQVERELML+K+N
Sbjct: 119 ESLAVGLNKDKALFTIVVSGTERVLQQVVEQLQKLVNVMKVEDLSSEPQVERELMLIKVN 178

Query: 152 VDPSTHPEIMXLVDIFRTKVVDISEHTLTIEVTGDPGKMAAVLRNLSNFRIEELT----I 207
            DPS   EIM LV IFR K+VDISEH+LTIEVTGDPGKM AV RNLS F I E+     I
Sbjct: 179 ADPSYRAEIMWLVGIFRAKIVDISEHSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKI 238

Query: 208 ALRRERMRETAPFWRFSAASYPDLERTQPGDAFXXXXXXXXXXXXXXXXXXXXXXXXXXD 267
           ALRRE+M E APFWRFSAASYPDL   +  DA                           D
Sbjct: 239 ALRREKMGECAPFWRFSAASYPDLGEIRSEDAL--------LGSKSRAVLGDDETSAGGD 290

Query: 268 VYPVEPYDDYSMNQVLDAHWGVLYDEDSSGSQSHTLSMLVNDSPGVLTWSLVLF 321
           VYPVE  D + + QVLDAHWGVL +ED++G +SHTLSMLVNDSPGVL     +F
Sbjct: 291 VYPVETSDSFMLTQVLDAHWGVLNEEDTTGLRSHTLSMLVNDSPGVLNIVTGIF 344



 Score =  129 bits (325), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/155 (43%), Positives = 107/155 (69%), Gaps = 6/155 (3%)

Query: 64  HTISVFIGDESGIINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVRGTDKVLQQVIE 121
           HT+S+ + D  G++N + G+FARRGYN++SLAVG ++ + L   T VV GTD+ + ++++
Sbjct: 324 HTLSMLVNDSPGVLNIVTGIFARRGYNVQSLAVGHSETEGLSRITTVVPGTDESISKLVQ 383

Query: 122 QLNKLVNVIKVEDISREPQVERELMLLKLNVDPSTHPEIMXLVDIFRTKVVDISEHTLTI 181
           QL KL+++ +V D++  P  ERELML+K+ V+ +   +++ +  IFR K VD+S+HT+T+
Sbjct: 384 QLYKLIDLHEVRDLTHLPFAERELMLIKIAVNAAARRDVLDIASIFRAKAVDVSDHTITL 443

Query: 182 EVTGDPGKMAAVLRNLSNFRIEELT----IALRRE 212
           E+TGD  KM A+ R L  + I E+     IAL RE
Sbjct: 444 ELTGDLDKMVALQRLLEPYGICEVARTGRIALVRE 478