Jatropha Genome Database

JcCA0313461.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313461.20 + phase: 0 /partial
         (80 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29709.m001183 pentatricopeptide repeat-containing protein, putative   137   7e-34
30147.m014364 pentatricopeptide repeat-containing protein, putative    99   4e-22
29780.m001366 pentatricopeptide repeat-containing protein, putative    68   1e-12
57969.m000011 pentatricopeptide repeat-containing protein, putative    64   2e-11
30190.m010943 conserved hypothetical protein                           59   7e-10

>29709.m001183 pentatricopeptide repeat-containing protein, putative
          Length = 357

 Score =  137 bits (346), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 63/80 (78%), Positives = 72/80 (90%)

Query: 1   MQFSLDELEMALQKASMPNKTVIIAVLNKAYVEPSVKSETTMLDLFLESFWYGEDTRSLL 60
           + F +DELE+AL++ASMPNKTVII +LNKAY EP+VKSETTMLDLFLESFW GEDTR LL
Sbjct: 58  ITFPIDELELALRRASMPNKTVIIVILNKAYAEPTVKSETTMLDLFLESFWVGEDTRPLL 117

Query: 61  DHLLVVAVDQTAYDRCKFKR 80
           DHLL+VA DQTAY+RC FKR
Sbjct: 118 DHLLLVAADQTAYERCMFKR 137


>30147.m014364 pentatricopeptide repeat-containing protein, putative
          Length = 360

 Score = 99.0 bits (245), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 48/75 (64%), Positives = 59/75 (78%), Gaps = 4/75 (5%)

Query: 6   DELEMALQKASMPNKTVIIAVLNKAYVEPSVKSETTMLDLFLESFWYGEDTRSLLDHLLV 65
           D LE  L +AS  NKT+IIA++NKAYVE     +  MLD+FL+SFW GEDTR L++HLL+
Sbjct: 76  DALESGLAEASTANKTLIIAMVNKAYVE----GDKPMLDMFLDSFWLGEDTRDLINHLLL 131

Query: 66  VAVDQTAYDRCKFKR 80
           VAVDQTAY+RCKF R
Sbjct: 132 VAVDQTAYERCKFLR 146


>29780.m001366 pentatricopeptide repeat-containing protein, putative
          Length = 394

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 50/70 (71%), Gaps = 5/70 (7%)

Query: 7   ELEMALQKASMPNKTVIIAVLNKAYVEPSVKSETTMLDLFLESFWYGEDTRSLLDHLLVV 66
           +LE  L++A+M +KTVI+  LN+A+  P+     +++DLFL SF  GE TR LL+HL+++
Sbjct: 99  KLEKVLKEAAMKDKTVILTTLNEAWAAPN-----SVIDLFLASFRLGEHTRKLLNHLVII 153

Query: 67  AVDQTAYDRC 76
           A+DQ A  RC
Sbjct: 154 ALDQKANARC 163


>57969.m000011 pentatricopeptide repeat-containing protein,
          putative
          Length = 136

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 6/71 (8%)

Query: 7  ELEMALQKASMP-NKTVIIAVLNKAYVEPSVKSETTMLDLFLESFWYGEDTRSLLDHLLV 65
          ELE  L+ ASM  NKTVI+  LN A+ +P      +++D+FLESF  G +T  LL HL++
Sbjct: 6  ELEKVLRAASMEDNKTVILTTLNDAWAKPG-----SVIDVFLESFRIGNNTNGLLTHLVI 60

Query: 66 VAVDQTAYDRC 76
          V +D+ A+ RC
Sbjct: 61 VTLDEKAHSRC 71


>30190.m010943 conserved hypothetical protein
          Length = 254

 Score = 58.5 bits (140), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 42/64 (65%), Gaps = 4/64 (6%)

Query: 17 MPNKTVIIAVLNKAYVEPSVKSETTMLDLFLESFWYGEDTRSLLDHLLVVAVDQTAYDRC 76
          MP +TVI+ +L+K++  P      ++LDLFLESF  GE T+ LL+HL+++A+D      C
Sbjct: 1  MPTRTVILTILDKSWASPPA----SVLDLFLESFQIGERTKHLLNHLIIIALDTHTLHYC 56

Query: 77 KFKR 80
          +  R
Sbjct: 57 QSIR 60