Jatropha Genome Database

JcCA0313071.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313071.20 - phase: 2 /partial
         (227 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m009084 conserved hypothetical protein                          356   5e-99

>30174.m009084 conserved hypothetical protein
          Length = 1246

 Score =  356 bits (914), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 173/226 (76%), Positives = 194/226 (85%), Gaps = 4/226 (1%)

Query: 1    APTEEFTITSNDYISPCIMELKRIPECASLVIGHNGFGEFTLWDISRRIFVSRFSTPGTS 60
            APTEEFTI SNDY SPCIMELKRIP+C SLVIGH+GFGEFTLWDIS+RIFVS+FS+P  S
Sbjct: 938  APTEEFTIQSNDYTSPCIMELKRIPKCTSLVIGHDGFGEFTLWDISKRIFVSKFSSPSNS 997

Query: 61   VCQFCPISWFSWQREVHASNYPNVAAHINRLIDATKVQFSEHSKNHSFPPLKGEDVAIWC 120
            V QF PIS F WQREVH  +Y NV AH+NRL+DATK+ FS HS NHS P    ED+AIW 
Sbjct: 998  VHQFSPISLFHWQREVHGLSYSNVEAHVNRLMDATKM-FSGHSINHSLP---HEDIAIWF 1053

Query: 121  LVSTALNTDAQHKYESSASQINPIGWWRLALLVKNTIILGSALDTRVSAIGTSAGHGIIG 180
            LVSTA ++DA H Y SS SQINP+G+WRLALL+KN++ILGSALD R +AIGTSAGHGIIG
Sbjct: 1054 LVSTAPDSDALHDYGSSHSQINPVGYWRLALLMKNSLILGSALDPRAAAIGTSAGHGIIG 1113

Query: 181  TLDGLVYMWELLTGDKLGTLHKFKGGSVSCIAADDSGSGVVAVADE 226
            TLDGLVYMWELLTG KLGTLHKFKGGS SCIA DDSGSGV+A+AD+
Sbjct: 1114 TLDGLVYMWELLTGKKLGTLHKFKGGSASCIATDDSGSGVLAIADD 1159