Jatropha Genome Database

JcCA0312871.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312871.20 + phase: 0 
         (190 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29647.m002112 phenazine biosynthesis protein, putative                328   6e-91

>29647.m002112 phenazine biosynthesis protein, putative
          Length = 489

 Score =  328 bits (842), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 165/200 (82%), Positives = 173/200 (86%), Gaps = 13/200 (6%)

Query: 1   MATTEVLQLIEEGLVSSRLLDPTKADTAKSRGLSIEKKIEFLESLTGKVSNRRSRRWIND 60
           MAT EVLQLIEEG+V+S +LD  KA+TAKSRGLSIEKKIEFLESLT KVSNRRSRRWIND
Sbjct: 1   MATPEVLQLIEEGIVTSPMLDHPKAETAKSRGLSIEKKIEFLESLTAKVSNRRSRRWIND 60

Query: 61  RLLMELVPRLNAEEIRGLFAPPPWGDDVPLSPFCMTNVGEWEKFRNIDMDKQ-------- 112
           RLLMELVPRLNA+EIRGLFAPPPWGDDVP S F MTNVGEWE FRNIDMDKQ        
Sbjct: 61  RLLMELVPRLNADEIRGLFAPPPWGDDVPPSAFSMTNVGEWEYFRNIDMDKQAHIIDGLS 120

Query: 113 -----RRGRVDADKVAVLNAWRRIDSRTREALRRSFLTDLIEGYEACIRTFIQESGDEEV 167
                RRGR+D DKVAVLNAWRRID RTREALRRSFLTDLI+GYE CIR FIQES DE+V
Sbjct: 121 NSTTKRRGRIDEDKVAVLNAWRRIDCRTREALRRSFLTDLIDGYETCIRAFIQESEDEDV 180

Query: 168 LALQVQDPFHRLLLHGVCEV 187
           LALQVQDPFHRLLLHGVCEV
Sbjct: 181 LALQVQDPFHRLLLHGVCEV 200