Jatropha Genome Database

JcCA0312871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312871.10 - phase: 0 
         (343 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29647.m002113 DNA binding protein, putative                           329   1e-90
29598.m000464 conserved hypothetical protein                           76   3e-14
29883.m001988 DNA binding protein, putative                            75   3e-14
29737.m001209 conserved hypothetical protein                           71   9e-13
29739.m003684 DNA-directed RNA polymerase beta chain, putative         70   2e-12

>29647.m002113 DNA binding protein, putative
          Length = 340

 Score =  329 bits (843), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 196/351 (55%), Positives = 230/351 (65%), Gaps = 24/351 (6%)

Query: 1   MEGQNCYQNPLELMLP-NLDGIDNHVSYGAD---DDLNQHSVMSDGRSKNMTNSLPLPQS 56
           M+GQN Y N LELM+  N+    N VSY  D   DD NQH +  DG  +N     PLP  
Sbjct: 1   MDGQNGYPNALELMMMMNIGWNVNDVSYVPDEPEDDSNQHFITLDGGGQN-----PLPLP 55

Query: 57  QWFHCQRTPQNYYEFLTENSSLVEKAP-THVLESIPQTVSDSHFIQGMTGIQTELLYNSS 115
             F  QRTP NYYEFLTENSS   KAP  HVLESIP  V DSHFIQG T IQ EL YNS 
Sbjct: 56  LLFGSQRTPLNYYEFLTENSS---KAPDRHVLESIPSPVGDSHFIQGTTEIQKELFYNS- 111

Query: 116 GMACGSNP--VDSSSDMDAWKLNLHPCIFNVDNQEDSLNVRCLKQNDEGDPVKKCKCLQH 173
           GM   SNP     S DMD+WKL+ +P +F++DN E SLNVR     +E D   + + LQ 
Sbjct: 112 GMPSSSNPKHAGPSLDMDSWKLSSYPYMFSMDNHESSLNVRY----NEEDSRNQLENLQD 167

Query: 174 HSKSQSHTSWEEEP-SEAIGNLSYSRPRAKVAASVFLSNSSYNVSXXXXXXX---XXXXX 229
            +++QSH  W +EP SE + N+S S+PRAKV+ SVFLSN   N S               
Sbjct: 168 QNQAQSHIVWTQEPPSEVVANVSQSQPRAKVSPSVFLSNPGSNPSRQRAISSDRRRRERI 227

Query: 230 XXXLKALHNLVPQSVEGSQTAMVDDIIDYVKFLQLQVKELSRSRLGGELRSDPSIFLEGY 289
              LKAL  L+P SVEGSQ  ++D+IIDYVK+LQLQ+KELSRSRL G L S P+ FLEGY
Sbjct: 228 AERLKALQELLPHSVEGSQIVVMDEIIDYVKYLQLQMKELSRSRLEGHLCSGPAHFLEGY 287

Query: 290 HHYIVHEQFRTEPLEETFTRLLEVNPSAATKFLESKGLFVMPMALADTISQ 340
           H YI+H+Q   EPLEET  +LL+VN SAATKFLESKGLFVMPMALAD + Q
Sbjct: 288 HPYILHQQTMNEPLEETMAKLLKVNSSAATKFLESKGLFVMPMALADRLKQ 338


>29598.m000464 conserved hypothetical protein
          Length = 326

 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 71/118 (60%), Gaps = 12/118 (10%)

Query: 233 LKALHNLVPQSVEGSQTAMVDDIIDYVKFLQLQVKELSRSRLG-----GELRSD-PSIFL 286
           +KAL  LVP + +  + AM+D+I+DYVKFL+LQVK LS SRLG      +L +D P   +
Sbjct: 189 MKALQELVPTANKTDRAAMIDEIVDYVKFLRLQVKVLSMSRLGAAGAVAQLVADVPLASV 248

Query: 287 EG------YHHYIVHEQFRTEPLEETFTRLLEVNPSAATKFLESKGLFVMPMALADTI 338
           EG        +    E++  +  E+   +L+E +  AA +FL+SK L +MP++LA  I
Sbjct: 249 EGESIDGAAANQQTWEKWSNDGTEQQVAKLMEEDIGAAMQFLQSKALCIMPISLASAI 306


>29883.m001988 DNA binding protein, putative
          Length = 299

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 63/114 (55%), Gaps = 11/114 (9%)

Query: 236 LHNLVPQSVEGSQTAMVDDIIDYVKFLQLQVKELSRSRLGGELRSDPSI----------- 284
           L  LVP   +  + AM+D+I+DYVKFL+LQVK LS SRLGG     P +           
Sbjct: 166 LQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEDE 225

Query: 285 FLEGYHHYIVHEQFRTEPLEETFTRLLEVNPSAATKFLESKGLFVMPMALADTI 338
             EG  +    E++  +  E    +L+E N  AA +FL+SK L +MP++LA  I
Sbjct: 226 TGEGGRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLATAI 279


>29737.m001209 conserved hypothetical protein
          Length = 474

 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 69/132 (52%), Gaps = 25/132 (18%)

Query: 233 LKALHNLVPQSVEGSQTAMVDDIIDYVKFLQLQVKELSRSRLGGELRSDP---SIFLEGY 289
           +KAL  LVP + +  + +M+D+IIDYVKFLQLQVK LS SRLGG     P    I  EG 
Sbjct: 282 MKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADISSEGG 341

Query: 290 HHYI---------------VHEQFRTEPLEETFT-------RLLEVNPSAATKFLESKGL 327
              I                +   +T    ++ T       +L+E +  +A ++L+ KGL
Sbjct: 342 GDCIQANANGAAGNGSLPRANNSSQTPSSNDSLTVTEHQVAKLMEEDMGSAMQYLQGKGL 401

Query: 328 FVMPMALADTIS 339
            +MP++LA  IS
Sbjct: 402 CLMPISLATAIS 413


>29739.m003684 DNA-directed RNA polymerase beta chain, putative
          Length = 592

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 13/120 (10%)

Query: 233 LKALHNLVPQSVEGSQTAMVDDIIDYVKFLQLQVKELSRSRLG-----------GELRSD 281
           +K L  LVP S +  + +M+D+II+YVKFLQLQVK LS SRLG           G+    
Sbjct: 377 MKNLQELVPNSSKVDKASMLDEIIEYVKFLQLQVKVLSMSRLGATGAVIPLITDGQAEGS 436

Query: 282 PSIFLEGYHHYIVHEQFRTEPL--EETFTRLLEVNPSAATKFLESKGLFVMPMALADTIS 339
            S+ L       +     ++ +  E    +LLE N + A ++L+ KG  +MP+ALA  IS
Sbjct: 437 NSLSLSTSAGLGIDVAPSSDQIAFEHEVLKLLESNVTKAIQYLQGKGFCLMPIALAAAIS 496