Jatropha Genome Database

JcCA0312671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312671.10 + phase: 1 /pseudo/partial
         (346 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30064.m000498 dihydrolipoamide succinyltransferase component of ...   240   7e-64
37595.m000013 dihydrolipoamide succinyltransferase component of ...    73   2e-13
32234.m000035 dihydrolipoamide acetyltransferase component of py...    64   1e-10
30061.m000282 dihydrolipoamide acetyltransferase component of py...    53   2e-07
29706.m001326 dihydrolipoamide acetyltransferase component of py...    53   2e-07

>30064.m000498 dihydrolipoamide succinyltransferase component of
           2-oxoglutarate dehydrogenase, putative
          Length = 469

 Score =  240 bits (613), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 131/199 (65%), Positives = 144/199 (72%), Gaps = 9/199 (4%)

Query: 74  RSFSSDSGDLVDAVVPFMGESITDGTLAKFLKKPGDRVEVDEPIAQIETDKVTIDVASPE 133
           R FSSDSGDLVDAVVPFMGESITDGTLAKFLK PGDRVEVDEPIAQIETDKVTIDVASPE
Sbjct: 87  RPFSSDSGDLVDAVVPFMGESITDGTLAKFLKNPGDRVEVDEPIAQIETDKVTIDVASPE 146

Query: 134 AGTIQKLVAKEGETVEPGTKIAVISKSGXXXXXXXXXXXX--XXXXXXXXXXXSGGKQTP 191
           AG I++ VAKEGETVEPGTK+A+ISKSG                         +  KQ P
Sbjct: 147 AGVIKEFVAKEGETVEPGTKVAIISKSGEGVAHVAPSEKVPEKVSPKASAPEKTEEKQKP 206

Query: 192 AVDSGPIKDSKRAPSAPQPPVKTPSSAPKPTEPQLPPKDRERRVPMTRLRKRVATRLKDS 251
            VD+ P+ +  +           P      TEPQLPPK+RERRVPMTRLRKRVATRLKDS
Sbjct: 207 KVDTAPVTEKPKT-------PAPPPPKRSATEPQLPPKERERRVPMTRLRKRVATRLKDS 259

Query: 252 QNTFAMLTTFNEVDISVLI 270
           QNTFAMLTTFNEVD++ L+
Sbjct: 260 QNTFAMLTTFNEVDMTNLM 278


>37595.m000013 dihydrolipoamide succinyltransferase component of
           2-oxoglutarate dehydrogenase, putative
          Length = 239

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 52/71 (73%)

Query: 88  VPFMGESITDGTLAKFLKKPGDRVEVDEPIAQIETDKVTIDVASPEAGTIQKLVAKEGET 147
           VP +GES+++ T+  + KK GD ++ DEP+ ++ETDKVTI+V +P AGT+ ++VA+ GET
Sbjct: 7   VPTLGESVSEATVGTWFKKVGDAIKADEPLLELETDKVTIEVPAPAAGTLSEIVAQAGET 66

Query: 148 VEPGTKIAVIS 158
           V  G  +  IS
Sbjct: 67  VGLGALLGQIS 77



 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 34/41 (82%)

Query: 230 DRERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDISVLI 270
           +RE RV MTRLR+ +A RLKD+QNT AMLTT+NEVD+  ++
Sbjct: 184 NREERVKMTRLRQTIAKRLKDAQNTAAMLTTYNEVDMKAVM 224


>32234.m000035 dihydrolipoamide acetyltransferase component of
           pyruvate dehydrogenase, putative
          Length = 265

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 84  VDAVVPFMGESITDGTLAKFLKKPGDRVEVDEPIAQIETDKVTIDVASPEAGTIQKLVAK 143
           V+ ++P +  ++ +GTL+K+LKK GD+V   + IA+IETDK T++V + + G I K++  
Sbjct: 3   VEILMPALSPTMEEGTLSKWLKKEGDKVTSGDVIAEIETDKATMEVEAVDEGVIGKILID 62

Query: 144 EG-ETVEPGTKIAVISKSGXXXXXXXXXXXXXXXXXXXXXXXSGGKQTPAVDSGPIKDSK 202
            G E V+  T IAV+ + G                       SG         G  +++ 
Sbjct: 63  AGTENVKVNTAIAVLLQEGESADDLSSSAAPKKEEPKAEAAGSGSDAA----GGKAREAS 118

Query: 203 RAPSAPQPPVKTPSSAPK---PTEPQLPPKDR-ERRVPMTRLRKRVATRLKDSQNTFAM 257
             PSA +   K P +APK     +P +P       +     LR  +A  ++  +N F M
Sbjct: 119 EEPSASKETAKAP-AAPKIEVAADPDIPEGTEFVSQTVREALRDAMAEEMRSDENVFVM 176


>30061.m000282 dihydrolipoamide acetyltransferase component of
           pyruvate dehydrogenase, putative
          Length = 633

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 4/102 (3%)

Query: 59  ITTLVQSEYL---FGFKSRSFSSDSGDLVDAVVPFMGESITDGTLAKFLKKPGDRVEVDE 115
           + T V  ++L    G   R FSS     +   +P +  ++T G +AK+ KK GD+V+V +
Sbjct: 60  MITGVHDKFLKLKLGIGVRHFSSSEPSHMVIGMPALSPTMTQGNVAKWRKKEGDKVKVGD 119

Query: 116 PIAQIETDKVTIDVASPEAGTIQKLVAKEGETVEP-GTKIAV 156
            + +IETDK T++  S E G + K++  EG    P G  IA+
Sbjct: 120 VLCEIETDKATLEFESLEEGFLAKILTPEGSKDVPVGQPIAI 161



 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 88  VPFMGESITDGTLAKFLKKPGDRVEVDEPIAQIETDKVTIDVASPEAGTIQKLVAKEG-E 146
           +P +  ++  G +AK+ KK GD++EV + I +IETDK T++    E G + K++A EG +
Sbjct: 216 MPALSPTMNQGNIAKWRKKEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 275

Query: 147 TVEPGTKIAV 156
            V  G  IA+
Sbjct: 276 DVAVGQPIAL 285


>29706.m001326 dihydrolipoamide acetyltransferase component of
           pyruvate dehydrogenase, putative
          Length = 543

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 54/86 (62%), Gaps = 3/86 (3%)

Query: 74  RSFSSDSG--DLVDAVVPFMGESITDGTLAKFLKKPGDRVEVDEPIAQIETDKVTIDVAS 131
           R FSSDSG     +  +P +  ++T+G +A++LKK GD++   E + ++ETDK T+++  
Sbjct: 110 RGFSSDSGLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKISPGEVLCEVETDKATVEMEC 169

Query: 132 PEAGTIQKLVAKEG-ETVEPGTKIAV 156
            E G + K++  +G + ++ G  IA+
Sbjct: 170 MEEGFLAKIIKGDGSKEIKVGEVIAI 195