Jatropha Genome Database

JcCA0312651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312651.10 + phase: 0 /partial
         (357 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30169.m006438 conserved hypothetical protein                          358   2e-99

>30169.m006438 conserved hypothetical protein
          Length = 527

 Score =  358 bits (919), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 214/343 (62%), Positives = 242/343 (70%), Gaps = 16/343 (4%)

Query: 20  RSRHKCIEVRNCGNFDKQAHLLQRRLEKFAGESDEACVKEIQEMAEASLSIKXXXXXXXX 79
           RSR+K +EVR C NFD+QA  LQRRLEKF GE DE CVKEIQEMAEASLSI+        
Sbjct: 182 RSRNKDLEVRKCSNFDRQASHLQRRLEKFTGEPDEICVKEIQEMAEASLSIQITSRANEN 241

Query: 80  XXXXXXXANMEILRKKMEGLSKEHLLERMEEECGPMLSTANTSGSSSVANCKRIELQEMS 139
                  +NMEILR++ME LSK +LLERME E G M+ST+N+S SSS A  K+ E  E+S
Sbjct: 242 FASNCS-SNMEILRRRMERLSKGNLLERMEVEYGSMVSTSNSSASSSAATSKQNEFPEIS 300

Query: 140 SSSMRPQSKERKLYEERACSGCCKAIVQRVVEQVRAETEQWSQMQEMLGQVRDEMEELQA 199
           SSS+R   KE K YEER CSG CKAIV+RVVEQVRAETEQWSQMQEMLGQVR EMEELQ 
Sbjct: 301 SSSLRQPCKELKPYEERPCSGGCKAIVRRVVEQVRAETEQWSQMQEMLGQVRHEMEELQV 360

Query: 200 SRDFWEDRALDSDYQIQSLQSAVKEWRRKAVSSEAKANELQAQVMXXXXXXXXXXXXXXX 259
           SRDFWEDRALDSDYQIQSLQSAVKEW+ KA+SSE+KA+ELQAQ                 
Sbjct: 361 SRDFWEDRALDSDYQIQSLQSAVKEWKLKALSSESKASELQAQASMLSAELEGLKKEKAK 420

Query: 260 XTIRTKNQKLNPHTESPNEMEKRVLVCRLKENRQANCGDGSKQKEMFADGRKK------S 313
              R+KN   N + +SPNEMEKRVLVCRLKEN      DG         GRKK      S
Sbjct: 421 ERSRSKNLAPNSY-DSPNEMEKRVLVCRLKENHHHGKDDGCSH----TVGRKKVNACSNS 475

Query: 314 HSLNASKRSPFREIGNSSS----PLSRQNSRAVFPLRCSIPSN 352
             L+A+KRSPF++IGNSSS    PL RQNSRAVFPL C + S+
Sbjct: 476 SGLDAAKRSPFKDIGNSSSLPLLPLMRQNSRAVFPLHCPVTSS 518