Jatropha Genome Database

JcCA0312601.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312601.30 + phase: 0 
         (55 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29827.m002604 conserved hypothetical protein                           78   8e-16

>29827.m002604 conserved hypothetical protein
          Length = 68

 Score = 78.2 bits (191), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 38/42 (90%), Positives = 39/42 (92%)

Query: 1  MTRGKQKIEAQRKNAERNQKAKGSQLEARAVALKVSCPICKV 42
          MTRGKQKIEAQR+NAERNQK KGSQLEARAVALKV CPICK 
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQLEARAVALKVICPICKT 42