Jatropha Genome Database

JcCA0312601.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312601.10 - phase: 0 /pseudo/partial
         (68 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29804.m001506 Palmitoyltransferase TIP1, putative                      45   5e-06

>29804.m001506 Palmitoyltransferase TIP1, putative
          Length = 545

 Score = 45.4 bits (106), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/47 (57%), Positives = 33/47 (70%)

Query: 1   SNAQQKQNKRWFDKIGLGKIGDTGYAPILFSIVIALMFLFINSVLSG 47
           S AQ+ Q K W DKI  GK+G  GYAPIL SI+I LM LF NS+++ 
Sbjct: 250 STAQRAQRKHWSDKICNGKMGHIGYAPILLSIIIILMVLFFNSIMAA 296