Jatropha Genome Database

JcCA0312361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312361.10 + phase: 0 
         (145 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30138.m004051 rotamase, putative                                      222   4e-59
27471.m000423 50S ribosomal protein L20, putative                      59   6e-10
31075.m000014 rotamase, putative                                       59   8e-10
30142.m000654 rotamase, putative                                       51   2e-07

>30138.m004051 rotamase, putative
          Length = 145

 Score =  222 bits (566), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 105/121 (86%), Positives = 109/121 (90%)

Query: 25  ENASXXXXXXXXXXXLGTCTYVKARHILCEKQGKINEAYQKLQDGWLNNGDKVPPAEFAK 84
           ENAS           LGTCTYVKARHILCEKQGKINEAY+KLQDGWL+NGDKVPPAEFAK
Sbjct: 25  ENASKGKGKAGKSDGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPPAEFAK 84

Query: 85  LAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPIGATSAPFKSTHGYHVILCEGRK 144
           LAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNT +GATSAPFKSTHGYH+ILCEGRK
Sbjct: 85  LAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTVVGATSAPFKSTHGYHIILCEGRK 144

Query: 145 N 145
           N
Sbjct: 145 N 145


>27471.m000423 50S ribosomal protein L20, putative
          Length = 224

 Score = 59.3 bits (142), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 37/60 (61%)

Query: 80  AEFAKLAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPIGATSAPFKSTHGYHVIL 139
           A+F  +A+ +S+C S K+GGDLG F RG+M  PF++  +   +G  S    +  G H+I+
Sbjct: 162 AKFEDIASRFSDCSSAKRGGDLGPFSRGQMQKPFEDATYALKVGEISEIVDTDSGVHIIM 221


>31075.m000014 rotamase, putative
          Length = 396

 Score = 58.9 bits (141), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 76  KVPPAEFAKLAAEYSECP-SGKKGGDLGWFPRGKMAGPFQEVAFNTPIGATSAPFKSTHG 134
           K  P +FA+LA +YS+ P S   GGDLG+  RG M  PF++  F    G+ S P ++  G
Sbjct: 62  KKSPDKFAELAKKYSQDPGSAANGGDLGFVKRGLMVKPFEDALFGMSPGSISGPIETEFG 121

Query: 135 YHVI 138
           YH+I
Sbjct: 122 YHII 125


>30142.m000654 rotamase, putative
          Length = 294

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 81  EFAKLAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPIGATSAPFKSTHGYHVI 138
           + + LA +YS CPS  +GG LGW  +G+M   F+E AFN P+       K+  G+H++
Sbjct: 116 DLSDLAVDYSICPSKAEGGMLGWVRKGEMVPEFEEAAFNAPLNKV-VKCKTKFGWHLL 172