Jatropha Genome Database

JcCA0312321.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312321.40 + phase: 0 
         (207 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30169.m006590 hypothetical protein                                    154   3e-38
28470.m000442 conserved hypothetical protein                          112   1e-25
30131.m007253 pentatricopeptide repeat-containing protein, putative    96   1e-20

>30169.m006590 hypothetical protein
          Length = 158

 Score =  154 bits (388), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 77/138 (55%), Positives = 97/138 (70%), Gaps = 8/138 (5%)

Query: 22  PIPAWEKQFCFAVGGIRWQDFLRAKKYASEFTKIMEWDDSAGKESFYNAKSRFWAKNGGL 81
           P P WEK FCF VGG++W+DFL+ K Y S + K+++WD+SAGKESF NAK+RF+A+    
Sbjct: 21  PAPKWEKDFCFEVGGMKWKDFLKRKAYTSYYPKVLQWDNSAGKESFINAKNRFYAEINKS 80

Query: 82  PFKTP-LPSPDIYIDRIDWTAKLDSQLLLDLEKARIYQVRDYEKETEKDRVLLKDIKPTG 140
           P KT  LP+PD+Y+D IDW AKLD QL L LE AR Y+         ++ V L  IKPTG
Sbjct: 81  PCKTELLPNPDMYVDEIDWDAKLDPQLFLGLEDARNYK-------PCEEVVPLDGIKPTG 133

Query: 141 WDIDFQDWNKPVLLIGMI 158
           WD+D  DWNKPV+L G I
Sbjct: 134 WDVDSCDWNKPVVLTGEI 151


>28470.m000442 conserved hypothetical protein
          Length = 291

 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/125 (43%), Positives = 80/125 (64%), Gaps = 9/125 (7%)

Query: 23  IPAWEKQFCFAVGGIRWQDFLRAKKYASEFTKIMEWDDSAGKESFYNAKSRFWAKNGGLP 82
           +P+WEK+FC+AVG + W+  L  KK    +  +++W+DSAG+E+F+NAK+RFWA+  GL 
Sbjct: 36  VPSWEKRFCYAVGLVPWRKLLETKKSMYLYENVVQWNDSAGEEAFHNAKNRFWAEINGLH 95

Query: 83  FKTPLPSPDIYIDRIDWTAKLDSQLLLDLEKARIYQVRDYEKETEKDRVLL------KDI 136
               LP PDIYID IDW++ +DS+L LDLE+   Y     EK+  ++ V+       +  
Sbjct: 96  CDISLPDPDIYIDEIDWSSNIDSELYLDLEREPKYPA---EKDKGEEVVIFGSSLLNQSF 152

Query: 137 KPTGW 141
             TGW
Sbjct: 153 SCTGW 157


>30131.m007253 pentatricopeptide repeat-containing protein, putative
          Length = 1128

 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 61/92 (66%)

Query: 23  IPAWEKQFCFAVGGIRWQDFLRAKKYASEFTKIMEWDDSAGKESFYNAKSRFWAKNGGLP 82
           +P+WEK+FC  +G + WQ  +  KK+      ++ W+DSAG ++F NAK+RFWA    LP
Sbjct: 40  VPSWEKKFCSLIGSVPWQKIVNVKKFMYCHDIVINWNDSAGADAFQNAKNRFWADINRLP 99

Query: 83  FKTPLPSPDIYIDRIDWTAKLDSQLLLDLEKA 114
            +  LP PD+Y+D I+W   +D +L+ +LE+A
Sbjct: 100 CQISLPDPDMYVDDINWHPDIDPELVKELERA 131