Jatropha Genome Database

JcCA0312321.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312321.30 + phase: 0 
         (425 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30169.m006477 conserved hypothetical protein                          708   0.0  

>30169.m006477 conserved hypothetical protein
          Length = 422

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/425 (80%), Positives = 377/425 (88%), Gaps = 3/425 (0%)

Query: 1   MARALFHLKSASVMACAKQSNHDNSRVQLLEKNRNAKXXXXXXXXXXXXSTAIALSKLCP 60
           MAR LF LKS SVMACAK    D +RV+L EK RN++            STAIALSKLCP
Sbjct: 1   MARVLFQLKSTSVMACAKL---DTNRVELPEKTRNSRVLVLGGTGRVGGSTAIALSKLCP 57

Query: 61  DLRIVIGGRNREKGAAMVAKLGKNSDFVEVNIDNVDSLEAALSDVDLVVHAAGPFQQAEK 120
           DLRIVI GRNREKGAA+V KLGKNSDF +V+I+NV+SLEAALSDVD+VVHAAGPFQQ EK
Sbjct: 58  DLRIVIAGRNREKGAALVDKLGKNSDFAQVDINNVESLEAALSDVDVVVHAAGPFQQTEK 117

Query: 121 CSVLEAAIETKTAYVDVCDDTNYALRAKSFKDRALAADIPAITTGGIYPGVSNVMAAELV 180
           CSVLEAAI TKTAY+DVCDDT+YALRAKSFKDRALAA+IPAITT GIYPGVSN+MAAELV
Sbjct: 118 CSVLEAAIATKTAYIDVCDDTSYALRAKSFKDRALAANIPAITTAGIYPGVSNIMAAELV 177

Query: 181 RAARTESKGKPDRLRFXXXXXXXXXXXPTILATSFLLLGEEVVAYNKGEKIKLKPFSGML 240
           RAAR ESKG P+RLRF           PTILATSFLLLGEEVVAYNKGE+IKLKP+SGML
Sbjct: 178 RAARMESKGNPERLRFHYYTAGTGGAGPTILATSFLLLGEEVVAYNKGERIKLKPYSGML 237

Query: 241 NIDFGKGIGKRDVYLLNLPEVRSAYEVLGIPTVSARFGTAPFFWNWGMEVMTNLLPPEFL 300
           NIDFGKGI KRDVYLLNLPEV+SA+E+LGIPTVSARFGT+PFFWNWGME+MTNL PPE L
Sbjct: 238 NIDFGKGIRKRDVYLLNLPEVQSAHEILGIPTVSARFGTSPFFWNWGMEIMTNLFPPEVL 297

Query: 301 RDRSKVQELVQLFDPLVRAVDGIAGERVSMRVDLECTDGRNTVAIFTHQRLSVSVGNATA 360
           RDRSKVQ+LVQLFDPLVRA+DGIAGERVSMR+DLEC+DGRNTV IF+H+RLSVSVGNATA
Sbjct: 298 RDRSKVQQLVQLFDPLVRALDGIAGERVSMRIDLECSDGRNTVGIFSHKRLSVSVGNATA 357

Query: 361 AFVLAVLEGSTQPGVWFPEEPEGIIIDAREVLLQRAAEGTINFVINKPPWMVETEPKLLG 420
           AFVLA+LEGST+PGVWFPEEPEGI  +AREVLLQRAAEGTINFV+NKPPWMVETEPK +G
Sbjct: 358 AFVLAILEGSTKPGVWFPEEPEGIATEAREVLLQRAAEGTINFVMNKPPWMVETEPKEVG 417

Query: 421 LGIYV 425
           LGIYV
Sbjct: 418 LGIYV 422