Jatropha Genome Database

JcCA0312321.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312321.20 - phase: 0 
         (144 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30169.m006478 conserved hypothetical protein                           75   1e-14

>30169.m006478 conserved hypothetical protein
          Length = 223

 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 55/64 (85%), Gaps = 1/64 (1%)

Query: 61  HDNEGQKAIMMVKEVFNTKRFIGRDDADIV-METNFEEINNEEKRSERLGREEDKEQLRL 119
           +D+E +KA+ ++++++NT+RFIGRDD+D V ME++ ++I  EEK+S R+ R+ED++QLRL
Sbjct: 149 YDHEAEKALSIIRKMYNTQRFIGRDDSDCVNMESSPKQIEKEEKQSARIARKEDRQQLRL 208

Query: 120 IEEE 123
           I+EE
Sbjct: 209 IQEE 212