Jatropha Genome Database

JcCA0312091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312091.10 - phase: 0 /partial
         (145 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29729.m002351 nucleic acid binding protein, putative                  162   6e-41
29939.m000547 nucleic acid binding protein, putative                  160   1e-40
29742.m001437 hypothetical protein                                     89   1e-18
29804.m001483 nucleic acid binding protein, putative                   84   3e-17

>29729.m002351 nucleic acid binding protein, putative
          Length = 655

 Score =  162 bits (409), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 81/114 (71%), Positives = 91/114 (79%)

Query: 26  LSIDPELWLMAXXXXXXXXXXXXPTLASEQKRKEVIDYIRRLIKGYYATEVFPSGSVPLK 85
           LSID ELWLMA            P+LASEQKRK VIDYI+RLIK ++ATEV P GSVPLK
Sbjct: 26  LSIDSELWLMAEKRAQEILWILQPSLASEQKRKVVIDYIQRLIKHHFATEVLPFGSVPLK 85

Query: 86  TYLPDGDIDLTVLSYQNMEEDLAREVYNMLKYEEQHPMSEVKDVQYIQAQVKIL 139
           TYLPDGDIDLT LS+QNMEEDL RE+ N+L YEEQ+  SEVKDV+YIQAQVKI+
Sbjct: 86  TYLPDGDIDLTALSHQNMEEDLVREICNILTYEEQNSESEVKDVRYIQAQVKIV 139


>29939.m000547 nucleic acid binding protein, putative
          Length = 644

 Score =  160 bits (406), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 86/139 (61%), Positives = 97/139 (69%)

Query: 1   MGDLQGXXXXXXXXXXXXXXXXXXXLSIDPELWLMAXXXXXXXXXXXXPTLASEQKRKEV 60
           MGDLQ                    LSID ELWLMA            P+ +SEQKRKEV
Sbjct: 1   MGDLQWCLSSCSSSTSSSHSLDLYPLSIDSELWLMAEKRTQEILWVLQPSSSSEQKRKEV 60

Query: 61  IDYIRRLIKGYYATEVFPSGSVPLKTYLPDGDIDLTVLSYQNMEEDLAREVYNMLKYEEQ 120
           IDYI+RLIK +YATEVFP GSVPLKTYLPDGDIDLT LS+QNMEEDLAREV ++L Y EQ
Sbjct: 61  IDYIQRLIKHHYATEVFPFGSVPLKTYLPDGDIDLTALSHQNMEEDLAREVCDILTYAEQ 120

Query: 121 HPMSEVKDVQYIQAQVKIL 139
           +  SEVKDV+YIQAQVK++
Sbjct: 121 NLESEVKDVRYIQAQVKVV 139


>29742.m001437 hypothetical protein
          Length = 1334

 Score = 88.6 bits (218), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/115 (46%), Positives = 70/115 (60%), Gaps = 3/115 (2%)

Query: 28  IDPELWLMAXXXXXXXXXXXXPTLASEQKRKEVIDYIRRLIKGYYATEVFPSGSVPLKTY 87
           +D E W  A            P   SE++R  V DY+ RLI   +   VF  GSVPLKTY
Sbjct: 24  LDSERWAKAEERTAELIDCIKPNEPSERRRNAVADYVERLITKCFPCRVFTFGSVPLKTY 83

Query: 88  LPDGDIDLTVLSY-QNMEEDLAREVYNMLKYEEQHPMS--EVKDVQYIQAQVKIL 139
           LPDGDIDLT  S  Q+M+E  A +V ++L+ EE++  +   VK+VQYIQA+VKI+
Sbjct: 84  LPDGDIDLTAFSEGQSMKETWAHQVRDVLENEEKNENAEFRVKEVQYIQAEVKII 138


>29804.m001483 nucleic acid binding protein, putative
          Length = 821

 Score = 83.6 bits (205), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/114 (39%), Positives = 67/114 (58%), Gaps = 2/114 (1%)

Query: 28  IDPELWLMAXXXXXXXXXXXXPTLASEQKRKEVIDYIRRLIKGYYATEVFPSGSVPLKTY 87
           I  E W  A            PT+ ++  RK V++Y++ LI+     +VFP GSVPLKTY
Sbjct: 46  ISEENWERAEQATLQIVYRIHPTVEADCNRKHVVEYVQSLIQSSLGFQVFPYGSVPLKTY 105

Query: 88  LPDGDIDLTVLSYQNMEEDLAREVYNMLKYEEQHPMS--EVKDVQYIQAQVKIL 139
           LPDGDIDLT +      +    +V+ +L+ EEQ+  +  +VKDV +I A+VK++
Sbjct: 106 LPDGDIDLTAIINPAGVDASVSDVHAVLRREEQNRDAPYKVKDVHFIDAEVKLI 159