Jatropha Genome Database

JcCA0311881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311881.10 + phase: 2 /partial/short
         (44 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29739.m003706 conserved hypothetical protein                           72   5e-14

>29739.m003706 conserved hypothetical protein
          Length = 100

 Score = 72.0 bits (175), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 32/44 (72%), Positives = 38/44 (86%)

Query: 1   NMVSLWTCSKVSIIFFVAGVFVGYTLKSRVKRWASKLLKRLKDD 44
            +VSLWTCSK+  +FF+AGV VGYTLK RV+RWASKLLK L+DD
Sbjct: 57  QLVSLWTCSKLCTVFFIAGVLVGYTLKRRVRRWASKLLKTLRDD 100