Jatropha Genome Database

JcCA0311501.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311501.20 + phase: 0 
         (341 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29883.m001968 chloroplast inner envelope protein, putative            632   0.0  
29844.m003204 chloroplast inner envelope protein, putative            588   e-168

>29883.m001968 chloroplast inner envelope protein, putative
          Length = 342

 Score =  632 bits (1631), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/343 (89%), Positives = 318/343 (92%), Gaps = 3/343 (0%)

Query: 1   MASSMINGAENLTLAR--GITQKGLGFSGSDFHGKYFPRVNLVSSARIFKATRIVTPKCS 58
           MASSM+NGAENLTL R      KGL FSGSDF+GK+FPRVNL SS+RI K T I  PKCS
Sbjct: 1   MASSMLNGAENLTLMRIKSTNHKGLSFSGSDFNGKHFPRVNLTSSSRILKTTTI-APKCS 59

Query: 59  LSASRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLNNRNMLV 118
           LSASRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADL++RNMLV
Sbjct: 60  LSASRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSDRNMLV 119

Query: 119 VDVXXXXXXXXXXIVKHVDAKNVTILDQSPHQLAKAKQKEPLKDCKIIEGDAEDLPFPTD 178
           VDV          IVKHVDAKNVTILDQSPHQLAKAKQKEPLK+CKIIEGDAEDLPFPTD
Sbjct: 120 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTD 179

Query: 179 YADRYVSAGSIEYWPDPQRGIKEAYRVLKLGGKACLIGPVYPTFWLSRFFADVWMLFPKE 238
           YADRYVSAGSIEYWPDPQRGI+EAYRVLKLGGKACLIGPVYPTFWLSRFFADVWMLFPKE
Sbjct: 180 YADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACLIGPVYPTFWLSRFFADVWMLFPKE 239

Query: 239 EEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKEEDV 298
           EEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKEEDV
Sbjct: 240 EEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKEEDV 299

Query: 299 SKPVHPFVFLLRFVLGALAATYYVLVPIYMWLKDQIVPKGRPI 341
           SKPV+PFVF LRF+LGA+AATYYVLVPIYMWLKDQIVPKGRPI
Sbjct: 300 SKPVNPFVFFLRFILGAMAATYYVLVPIYMWLKDQIVPKGRPI 342


>29844.m003204 chloroplast inner envelope protein, putative
          Length = 341

 Score =  588 bits (1517), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 279/341 (81%), Positives = 303/341 (88%)

Query: 1   MASSMINGAENLTLARGITQKGLGFSGSDFHGKYFPRVNLVSSARIFKATRIVTPKCSLS 60
           MA+ ++NGAENL   RGIT  GLGF GS+FH   FP+  LVS  R  +++R++ P CS+S
Sbjct: 1   MAAPLLNGAENLKFRRGITPAGLGFVGSNFHVSCFPKKILVSYTRNSQSSRLLAPSCSIS 60

Query: 61  ASRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLNNRNMLVVD 120
           +SRPASQPRFIQHK EAFWFYRFLSIVYDH+INPGHWTEDMRD+ALEPADL +RNM VVD
Sbjct: 61  SSRPASQPRFIQHKTEAFWFYRFLSIVYDHIINPGHWTEDMRDEALEPADLYDRNMTVVD 120

Query: 121 VXXXXXXXXXXIVKHVDAKNVTILDQSPHQLAKAKQKEPLKDCKIIEGDAEDLPFPTDYA 180
           V          IVKHVDAKNVTILDQSPHQLAKAKQK PLK+CKIIEGDAEDLPFPTDYA
Sbjct: 121 VGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKAPLKECKIIEGDAEDLPFPTDYA 180

Query: 181 DRYVSAGSIEYWPDPQRGIKEAYRVLKLGGKACLIGPVYPTFWLSRFFADVWMLFPKEEE 240
           DRYVSAGSIEYWPDPQRGIKEAYRVLK+GGKACLIGPVYPTFWLSRFFADVWMLFPKEEE
Sbjct: 181 DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVYPTFWLSRFFADVWMLFPKEEE 240

Query: 241 YIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKEEDVSK 300
           YIEWF++AGFKDV+LKRIGPKWYRGVRRHGLIMGCSVTGVKP SGDSPLQLGPK EDV K
Sbjct: 241 YIEWFKRAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKAEDVKK 300

Query: 301 PVHPFVFLLRFVLGALAATYYVLVPIYMWLKDQIVPKGRPI 341
           PV+PF FLLRF+LG +AATYYVLVPIYMW+KDQIVPKG PI
Sbjct: 301 PVNPFTFLLRFILGTIAATYYVLVPIYMWIKDQIVPKGMPI 341