Jatropha Genome Database

JcCA0311471.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311471.20 - phase: 0 
         (298 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28448.m000364 Coiled-coil domain-containing protein, putative         526   e-150

>28448.m000364 Coiled-coil domain-containing protein, putative
          Length = 304

 Score =  526 bits (1355), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 261/304 (85%), Positives = 278/304 (91%), Gaps = 6/304 (1%)

Query: 1   MSDIISGVDTP------VTEAKSGSDGAKVAEVKTWLASQFDAAGKEVPEFEYTSRSIAH 54
           MSDIIS VD         + +  GSD ++++EVK WL SQF+AAGK+VPEFEYT RSI+H
Sbjct: 1   MSDIISKVDNEQKTSSSNSSSSGGSDASRISEVKAWLTSQFEAAGKDVPEFEYTQRSISH 60

Query: 55  LYNLASVSQAKTQAANILANDFRLKATEYRAQAARIREILEGVELAQEGLPSNVVGSAQV 114
           LYNLA++SQ+KT AANILANDFR KATEYRAQAARIREILE V LAQE LPSNVVGSAQV
Sbjct: 61  LYNLATLSQSKTNAANILANDFRQKATEYRAQAARIREILENVGLAQESLPSNVVGSAQV 120

Query: 115 LANVANLLNIRDTELSSFLVAMGDISLRKTGVEEKRAKAQKESKILLDYTRKAIARLTYL 174
           LANVANLLNIRDTELSSFLVAMGDISLRKTGVEEKRAKAQK+SKILLDYTRKAIARLTYL
Sbjct: 121 LANVANLLNIRDTELSSFLVAMGDISLRKTGVEEKRAKAQKDSKILLDYTRKAIARLTYL 180

Query: 175 KRTLAQLEDDVAPSEAQMENWKTNLAIMASKERQYLQQYSNYKAVLNRVGYTPEISHGVL 234
           KRTLAQLEDDVAP EAQMENWKTNLA+MASKERQYLQQYSNYKA+LNRVGYTPEISHGVL
Sbjct: 181 KRTLAQLEDDVAPCEAQMENWKTNLAVMASKERQYLQQYSNYKALLNRVGYTPEISHGVL 240

Query: 235 VEMAEHRKELEKKTKPIMDALRSYKDLPPDKTLAALAIEDKKRQYAAAEKYLEDVLQSAL 294
           VEM+EHRKELEKKTKPIMD LRSY+DLPPDK LAALAIEDKKRQYAAAEKYLEDVL SAL
Sbjct: 241 VEMSEHRKELEKKTKPIMDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKYLEDVLHSAL 300

Query: 295 ATSD 298
           ATSD
Sbjct: 301 ATSD 304