Jatropha Genome Database

JcCA0311471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311471.10 - phase: 0 /pseudo/partial
         (311 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29955.m001175 conserved hypothetical protein                          346   9e-96
29950.m001126 conserved hypothetical protein                           60   1e-09

>29955.m001175 conserved hypothetical protein
          Length = 397

 Score =  346 bits (887), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 177/260 (68%), Positives = 196/260 (75%), Gaps = 23/260 (8%)

Query: 1   MESISSSMFVSRFPETVPIINTXXXXXXXXXXXXXXXXXXXXXDIIYLSDKRIGSLKFPE 60
           M+++SSS+FVSRFPET P + +                      +I + +KRIGSLKF E
Sbjct: 1   MDALSSSVFVSRFPETYPTVQSNSSSSSASSSS-----------VIKILNKRIGSLKFAE 49

Query: 61  TARFPGLRTRALARELSGGEGEDHRPLDNG-----XXXXXXXXXXXXXQDNNEKDAEKIV 115
           TA F GLR   LA E+SGGEGED RPL+NG                   ++++KDAEKI+
Sbjct: 50  TAGFHGLRAHCLAHEVSGGEGEDERPLNNGFGLVSDDTLSFSQGNIKRNESSKKDAEKII 109

Query: 116 KFETPLAV-------GGTRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLC 168
           K ETPL V       GGTRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLC
Sbjct: 110 KVETPLVVPHGSSTGGGTRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLC 169

Query: 169 TVMSRMHHRREGYPFGSLVDFAPDPMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSG 228
           T+MSRMHHRREGYPFGSLVDFAPD +GHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSG
Sbjct: 170 TIMSRMHHRREGYPFGSLVDFAPDSVGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSG 229

Query: 229 LSNARVTIFGDVFPLPENQQ 248
           LSNARVTIFGDVFPLPE+QQ
Sbjct: 230 LSNARVTIFGDVFPLPEDQQ 249


>29950.m001126 conserved hypothetical protein
          Length = 281

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%)

Query: 170 VMSRMHHRREGYPFGSLVDFAPDPMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGL 229
           V+S    + +GYP GS+VDFA D  G PI + S LA H+++LLA+ +C+L+V        
Sbjct: 56  VLSTFSQKHDGYPSGSMVDFACDVDGTPILAVSSLANHSKDLLANSKCSLLV-ARDHEDR 114

Query: 230 SNARVTIFGDVFPLPENQQVVI 251
           ++  +T+ GD   + E  +  +
Sbjct: 115 TDLVITLHGDAVSVSEGDRSAV 136